Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_C02
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1076 + 34359922-34360452 40 0.001
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 31 0.58
06_02_0195 + 12895579-12895968 30 1.8
09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,989... 29 2.4
06_02_0233 + 13315579-13316046 29 2.4
04_02_0009 + 8476600-8477125,8478711-8478730 29 2.4
09_02_0420 + 9051728-9051754,9053244-9053530,9055263-9055500,905... 29 3.1
03_01_0638 - 4676624-4676756,4676792-4676943,4677089-4677262 28 5.4
07_03_1794 - 29580767-29584189 27 9.5
03_01_0128 + 995103-995174,996500-996606,996909-997041,997127-99... 27 9.5
>01_06_1076 + 34359922-34360452
Length = 176
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 238 GGGGSQTKLLPGSERRGQRRPQECREGHR*QHPGRQQESAGLERGRRLQ-EPHRERRVQR 414
GGGG + P RG R R R + PGRQQ++A GRRL+ E R R +
Sbjct: 61 GGGGDELSAQPRRRPRGGSR----RWSSRGRQPGRQQKAAPRRPGRRLKAEGVRCRPMVA 116
Query: 415 CTKQELPEAIRGP 453
C+K++ + R P
Sbjct: 117 CSKRQSARSARSP 129
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 31.5 bits (68), Expect = 0.58
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +1
Query: 238 GGGGSQTKLLPGSERRGQRRPQECREGHR*QHPGRQQESAGLERGRRLQEPHRERRVQRC 417
GGGG K ERR + + +E E R + +++E ER R +E R+R +
Sbjct: 474 GGGGKGEKEREEEERRQREKEEE--ERRRQEEERKRREEEEKERREREEEERRQREKEEK 531
Query: 418 TKQELPEAIR 447
++E E R
Sbjct: 532 KRREEEEQRR 541
>06_02_0195 + 12895579-12895968
Length = 129
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 235 CGGGGSQTKLLP-GSERRGQRRPQECREG-HR*QHPGRQQESAGLERGRRLQEPHR 396
CG G+Q LP G + + + R H GR+QE+A R R + PHR
Sbjct: 43 CGRPGAQAATLPLGEQSQSEAATAAARFSLHSLDAGGRKQEAADDARRRAVMPPHR 98
>09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,
9893330-9893557,9894095-9894261,9894312-9894395,
9894614-9894820,9894919-9895251,9895371-9895513,
9895607-9895723,9895824-9895980,9896054-9896157,
9896272-9896432,9896518-9896707,9896732-9896834,
9896950-9897231,9897327-9897649,9897750-9897786,
9898109-9898162,9898292-9898368,9898449-9898502,
9898738-9898822,9900289-9900426,9900592-9900603
Length = 1150
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 25 NTVVVLNQFIFSAVITMLGGQRFWGLSQSAQLQASHL 135
N + F F+ VI +L G FWG+ + + +ASH+
Sbjct: 990 NPPYIAVNFFFTVVIALLFGTMFWGVGRKRE-RASHM 1025
>06_02_0233 + 13315579-13316046
Length = 155
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +1
Query: 229 TACGGGGSQTKLLPGSERRGQRRPQECREGHR*QHPGRQQESAGLERG-RRLQEPHRERR 405
TA GGG +L R QRRP RE R + R++ S E G R P E R
Sbjct: 71 TAVFGGGVGGRLSAERRSRWQRRPAR-RERRRWRPAWRERRSRWREVGLAREARPVEEAR 129
Query: 406 VQRCTKQELPEAIRG 450
+ R + + EA G
Sbjct: 130 LAREARPAVEEATFG 144
>04_02_0009 + 8476600-8477125,8478711-8478730
Length = 181
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 340 RQQESAGLERGRRLQEPHRERRVQRCT 420
R++ A + RGRRL+ R R +RCT
Sbjct: 126 RRRSPAAVARGRRLRRQQRRRPTRRCT 152
>09_02_0420 +
9051728-9051754,9053244-9053530,9055263-9055500,
9057010-9057204,9058075-9058339,9058520-9058827
Length = 439
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 229 TACGGGGSQTKLLPGSERRGQRRPQECREGHR*Q-HPGRQQESAGLERGRRLQEPHRER 402
TA G G +QT ERR +RR E R R HP +Q G R ++ HR R
Sbjct: 287 TASGDGAAQTAEATRLERRRRRRWVEWRRRRRATGHPKGRQPPGSSGSGARARQ-HRRR 344
>03_01_0638 - 4676624-4676756,4676792-4676943,4677089-4677262
Length = 152
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = +1
Query: 238 GGGGSQTKLLP--GSERRGQRRPQECREGHR*QHPGRQQESAGLERGRRLQEPHRERRVQ 411
GGGG+ + G RRG+ + + G + G +A + G +P RR
Sbjct: 52 GGGGAMMAVAAAGGQPRRGRTKEEPAAAGAEEEKGGEDAAAAAVAIGMPSSKPEMTRRAL 111
Query: 412 RCTKQELPEA 441
R + EA
Sbjct: 112 RAEEAAAAEA 121
>07_03_1794 - 29580767-29584189
Length = 1140
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +2
Query: 260 SFCLEV--SGAGSDDLRSVERDTVNSIQDDSRRVRGLREGGDCRNHTGS 400
S CL+ + + SD+ S TVNS S+R++GLR GGD + +G+
Sbjct: 556 SECLDTLTNKSDSDEKGSSVVVTVNSF-GGSKRIQGLRIGGDENSMSGN 603
>03_01_0128 +
995103-995174,996500-996606,996909-997041,997127-997270,
997589-997747,997865-997938,998024-998099,998476-998531,
998651-998738,998824-998964,999057-999206,999320-999476,
1001183-1001773,1002673-1003532
Length = 935
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 349 PAVVLDAVNGVPLDTPEVVAARAAHFQAKALSGYHH 242
PA V+ + P D+P+V A AL+G HH
Sbjct: 547 PAAVVSSALSSPSDSPDVARAGLQALGNAALAGEHH 582
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,089,856
Number of Sequences: 37544
Number of extensions: 277841
Number of successful extensions: 1102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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