Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_C02
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical pr...    32   0.40 
Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical p...    28   6.5  
Z49968-12|CAA90264.1|  880|Caenorhabditis elegans Hypothetical p...    28   6.5  
Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    28   6.5  

>Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical
           protein F19H8.5 protein.
          Length = 514

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = -3

Query: 565 VLFS--IFAAAVAKPSLVAPLAYSAVVPGVSSLSQYSTSVVHGSPLV-APALYN 413
           V+FS  IF+  +  PS+++P  +S  VP    LS Y  S    SPLV AP + N
Sbjct: 377 VIFSPNIFSPLILNPSVLSPWIFSPAVPLPFILSPYLLSPYIFSPLVMAPFILN 430


>Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical
           protein T06E4.10 protein.
          Length = 180

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 550 FAAAVAKPSLVAPLAYSAVVPGVSSLSQYSTSVVHGSPLVAPA 422
           +A A+  P+    LA  A  PG+++ +     VV  +P +APA
Sbjct: 53  YAPALGAPAYAPALAAPAYAPGLAAPAFAPAPVVAAAPALAPA 95


>Z49968-12|CAA90264.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 316 PLDTPEVVAARAAHFQAKALSGYHHLR 236
           P+DTP   +  AA  +    SGYHHLR
Sbjct: 479 PIDTP-TPSGTAAWIKESYYSGYHHLR 504


>Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 316 PLDTPEVVAARAAHFQAKALSGYHHLR 236
           P+DTP   +  AA  +    SGYHHLR
Sbjct: 479 PIDTP-TPSGTAAWIKESYYSGYHHLR 504


>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -3

Query: 529 PSLVAPLAYSAVVPGVSSLSQYSTSVVHGSPLVAPA 422
           PS +AP A SA  P  S L+  STS     P +AP+
Sbjct: 302 PSTIAPAAPSAPAPAPSQLNPTSTSPT--MPAIAPS 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,611,305
Number of Sequences: 27780
Number of extensions: 191161
Number of successful extensions: 551
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)