Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_C01
         (300 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   2.9  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    20   5.0  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    19   8.7  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    19   8.7  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory
          receptor candidate 23 protein.
          Length = 291

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 68 YFLNICCMXRNV 33
          Y+LN+CC+  ++
Sbjct: 56 YWLNVCCLNLSI 67


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +2

Query: 119 FSNNISIIQLFYVTSDITXLIFKSVYE 199
           FSN   ++ + ++TS+    + K  Y+
Sbjct: 332 FSNACEVMAIVWITSETCEEVSKKCYK 358


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 133 KHYTIILCD 159
           KHY I  CD
Sbjct: 48  KHYNIFACD 56


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 133 KHYTIILCD 159
           KHY I  CD
Sbjct: 48  KHYNIFACD 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,016
Number of Sequences: 336
Number of extensions: 766
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5429307
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)