Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_C01
         (300 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0169 - 21303270-21303731,21304863-21304996,21305384-21305630     27   2.7  
09_03_0056 - 11936264-11939677                                         26   4.7  
01_03_0004 + 11542150-11542255,11542413-11542807                       26   4.7  

>09_06_0169 - 21303270-21303731,21304863-21304996,21305384-21305630
          Length = 280

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 141 YNYFM*HRILXYSFSSQFMKSHSFT*TTLV*IFYISHLSSF 263
           ++ F+ H  L  ++S+ F+K  +    TL+ +F +   SSF
Sbjct: 92  FSDFLYHTCLSLAYSAHFLKMMAIIVVTLILLFQVQSKSSF 132


>09_03_0056 - 11936264-11939677
          Length = 1137

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 141 YNYFM*HRILXYSFSSQFMKSHSFT*TTLV 230
           Y Y   H    +SF S + KSH F   TLV
Sbjct: 561 YQYLPFHLKRCFSFCSMYPKSHEFDAETLV 590


>01_03_0004 + 11542150-11542255,11542413-11542807
          Length = 166

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -3

Query: 214 VKLWDFIN*LENEXCNIRCHIK*LYNAYVITKFTILVVNAS 92
           V++W+  + L+ +   ++C    L+NAYV+T ++   V +S
Sbjct: 36  VEIWE-CHLLDVDEAKVQCFDSLLHNAYVVTSYSSSTVLSS 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,196,509
Number of Sequences: 37544
Number of extensions: 58983
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)