Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_B23
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0417 - 2972877-2973876,2973946-2974851,2975823-2976616,297...    31   0.64 
08_02_0284 - 15305062-15305170,15305299-15305460,15306348-153064...    29   2.6  

>06_01_0417 -
           2972877-2973876,2973946-2974851,2975823-2976616,
           2977887-2977977,2978305-2978384
          Length = 956

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 203 SXKIHLTQGNDHSVRLRRIRFIESNPTYISQFQV 304
           S  IH     +HS+ L  + F+ES P +I++F +
Sbjct: 767 SLSIHTLDEKEHSLSLDNLAFVESPPLFITKFSL 800


>08_02_0284 -
           15305062-15305170,15305299-15305460,15306348-15306485,
           15306741-15306754
          Length = 140

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 195 LGHPQKYISHKATIIPFA*GEYVLSNPIQHILVSFKFNETKIRHENRFVPRQLN 356
           L HP+K+ +   T+I F+ G       I+ + + F      +   N+F+PR +N
Sbjct: 85  LRHPEKFHAFIHTMIDFSRGRINTHTVIERVKILFDGYPDLLLAFNKFLPRGIN 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,271,557
Number of Sequences: 37544
Number of extensions: 145542
Number of successful extensions: 176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)