Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_B22
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0245 + 15995689-15995742,15995979-15996075,15996165-159961... 33 0.25
03_02_0211 - 6436275-6436361,6436969-6437235,6438475-6438543,643... 33 0.32
07_01_0657 - 4915264-4915386,4915586-4915714,4917773-4917859,491... 31 0.75
10_08_0788 + 20553587-20553726,20554131-20554196,20554695-205549... 29 3.0
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409... 29 4.0
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 28 7.0
04_01_0205 - 2489201-2489630,2489704-2489945 28 7.0
04_03_0640 + 18257612-18257787,18257831-18257906,18259105-18260556 28 9.2
>09_04_0245 +
15995689-15995742,15995979-15996075,15996165-15996185,
15996442-15996573,15996707-15996834,15996919-15997203,
15997391-15997521,15999700-15999817,16000609-16000703,
16001437-16001511,16001860-16001911,16002767-16002859,
16003625-16003690,16003785-16003867,16003942-16004054,
16005271-16005410,16005569-16005643,16006084-16006160,
16006426-16006514,16008039-16008085,16009004-16009138,
16009298-16009345,16009605-16009667,16009709-16009730,
16010284-16010458,16014250-16014321,16014887-16014958,
16015904-16016005,16016197-16016225,16016333-16016403,
16016549-16016597,16016684-16016784,16017495-16017623,
16017683-16017752,16017975-16018194,16019368-16019389,
16019457-16019604,16021569-16021693,16022344-16022774,
16022984-16023110,16023241-16023292,16023351-16023502
Length = 1461
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -3
Query: 225 APPVEADACSAGDRQRLTHREPRVRAESEAGRARGQVRRPPATGETT 85
APP+ A +A DR LT REP + E G A+ +P + TT
Sbjct: 516 APPLHAQPAAASDRILLTRREPSMDQLKELGWAKRWSSQPYVSCRTT 562
>03_02_0211 -
6436275-6436361,6436969-6437235,6438475-6438543,
6439108-6439236,6439319-6439480,6439558-6439678,
6439813-6439928,6440697-6440762,6441010-6441091,
6441236-6441327,6441430-6441537,6441919-6442013,
6442092-6442234,6442336-6442364,6442452-6442571,
6442645-6442734,6443116-6443181,6443267-6443380,
6443482-6443574
Length = 682
Score = 32.7 bits (71), Expect = 0.32
Identities = 29/139 (20%), Positives = 65/139 (46%), Gaps = 7/139 (5%)
Frame = -1
Query: 686 YNKAVTITKSLQDDNVGFVIKEXVDRLLRA*EPNVFAYAD-KLWSAGHHDIVNDFFPSEI 510
YN A+++ +SL ++++ +D+L+R E VFAY +L G H + +
Sbjct: 501 YNHAISVIQSLGEEDINVKFLVQLDKLIRLLETPVFAYLRLQLLEPGKHTWLLKTLYGLL 560
Query: 509 KLITKQE------RVKIIGRYYNQALKLDANVDRYNDRLAWGDSKDKTSHRVSWKLIPVW 348
L+ +Q R ++ +++ LK ++ + Y+ L + ++ S+ I +
Sbjct: 561 MLLPQQSAAFKILRTRLKTVPFSENLKRTSSTNPYSQILQVTEDGNRNHDTQSYNAIN-F 619
Query: 347 ENNKLLYKIMNTEHTMYLK 291
+ ++ M +H ++LK
Sbjct: 620 PSRLHQFESMQQQHRVHLK 638
>07_01_0657 -
4915264-4915386,4915586-4915714,4917773-4917859,
4918220-4918368,4918498-4918555,4918632-4920614,
4922064-4922123
Length = 862
Score = 31.5 bits (68), Expect = 0.75
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 329 YKIMNTEHTMYLKLDVNVDGYGDRQAWGSNNSNEKRHLWKLTPVVLETGN 180
++++N+E+ + LD N++G GDR A K HL + V GN
Sbjct: 390 FELLNSENILDSSLDPNLEGLGDRHANVILKDISKEHLLDIPHVSSACGN 439
>10_08_0788 +
20553587-20553726,20554131-20554196,20554695-20554926,
20555033-20555237,20555335-20555441
Length = 249
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 275 DGYGDRQAWGSNNSNEKRHLW-KLTPVVLETGNVLLIEN 162
D Y D + W N N ++H+W + P GN L+ N
Sbjct: 6 DSYIDGKGWEQENQNSRKHIWQRHGPDRERNGNSKLVVN 44
>08_02_1002 +
23439642-23440046,23440558-23440761,23440874-23440990,
23441116-23441511,23441586-23441938,23442067-23442187,
23442602-23442781,23442813-23442896,23444398-23444523,
23445286-23445588
Length = 762
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 550 PADHNLSAYANTLGSHARRSLSTXSLITKPTLSSCKDFVIVTAL 681
P N S N+ H+R L T + P C DF V+A+
Sbjct: 336 PGKENQSCTTNSFRDHSRFPLKTVPKCSNPEEEKCADFQTVSAV 379
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 262 SPYPSTFTSSFRYIVCSVFI 321
S +PSTFTS R+I CS+ I
Sbjct: 555 SIHPSTFTSFSRFITCSICI 574
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 231 REAPPVEADACSAGDRQRLTHREPRVRAESEAGRARGQVR 112
R PP ++D+ S R+R T R PR R GR+R + R
Sbjct: 38 RSPPPKKSDSRSPPPRRRSTSRSPRPRRH---GRSRSRSR 74
>04_01_0205 - 2489201-2489630,2489704-2489945
Length = 223
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 189 DRQRLTHREPRVRAESEAGRARGQVRRPPA 100
D R H+ R ESEAGR V +PPA
Sbjct: 56 DAARAAHQAELRRMESEAGRLDALVAQPPA 85
>04_03_0640 + 18257612-18257787,18257831-18257906,18259105-18260556
Length = 567
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 263 DRQAWGSNNSNEKRHLWKLTPVVLETGNVLLIENHEYGQSLKLDA 129
DR W S+ E RHL ++ V + + LL E + Y +K++A
Sbjct: 192 DRLEWHSHRETEARHLRQIKDAVYDAED-LLDEYNYYALKVKVEA 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,529,642
Number of Sequences: 37544
Number of extensions: 390909
Number of successful extensions: 1372
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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