Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_B22
         (755 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    28   0.27 
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      27   0.83 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   4.4  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    24   5.8  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   5.8  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 28.3 bits (60), Expect = 0.27
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 487  LSCLVINLISEGKKSLTISWCPADHNLSAYANTL--GSHAR 603
            +  ++ +L  E KK L ++W   D N  +  +TL  G+ AR
Sbjct: 1013 IQAIITDLDEEKKKKLKVAWSEVDENFGSIFSTLLPGTQAR 1053


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 26.6 bits (56), Expect = 0.83
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 300 HSMFSVHYFIQQLVILPYRDKLPAHSVTSFV 392
           H + S+H ++Q+ V+ P+  K  AHS+ S V
Sbjct: 337 HELGSLHDYLQKRVLNPHMLKTLAHSLASGV 367


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 515 EIKLITKQERVKIIGRYYNQALKLDANVDRYNDRLAWGDSKDKTSHRVSWK 363
           E +L+ +QER K       +  + +  +DR N+ L +  SKD + +   W+
Sbjct: 806 ERELVLQQERAK-------KRAEFEQQIDRINNNLEFERSKDTSKNVQRWE 849


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -3

Query: 180 RLTHREPRVRAESEAGRARGQVRRPPATGETTETSMVXPG 61
           R TH   R       GR+R Q +R   T E+T      PG
Sbjct: 339 RATHAS-RSATRMSRGRSRSQTKRYSQTVESTNAPSRSPG 377


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 213 EADACSAGDRQRLTHREPRVRAESEAGR 130
           + D   AG +Q L+HR  R   ++ AGR
Sbjct: 271 QPDENPAGAQQHLSHRPQRSTRKNPAGR 298


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 745,321
Number of Sequences: 2352
Number of extensions: 14154
Number of successful extensions: 33
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78170964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)