Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_B15
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    25   1.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.4  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 169 SVQHRSGDNRK*LPRIYS*NGYCQTCKAWXWNVPSKYRHEXPIPFVMP 26
           S+ +R+  N       Y+ N Y   CK   +N+   Y  + P+P  +P
Sbjct: 84  SLSNRTIHNNNNYKYNYNNNNYNNNCKKLYYNI--NYIEQIPVPVPVP 129


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 402 DWENNVLRLGTNDAQYVEVIH 340
           DW  N+ + G N  + +E+IH
Sbjct: 232 DWLFNLTKYGKNQIKLLEIIH 252


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 651 LTSGDYNVIVVDWSSF 604
           + +GDY V+  +WSSF
Sbjct: 379 IQNGDYVVLETEWSSF 394


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 651 LTSGDYNVIVVDWSSF 604
           + +GDY V+  +WSSF
Sbjct: 85  IQNGDYVVLETEWSSF 100


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 204 AATITHGKHYGNQCSTEAAITANN 133
           A+   + K+Y   CSTE  +T  N
Sbjct: 441 ASVTPYNKNYTKFCSTEKRLTKQN 464


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 57  RYLLGTFQXHALQVWQYPFQL*ILGNYLRLSP 152
           R++    + HA  ++QY F + I     R+SP
Sbjct: 350 RHVQAEAEKHAAMLYQYNFNIIISEPTERISP 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,077
Number of Sequences: 438
Number of extensions: 5150
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)