Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_B13
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 28 1.7
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 27 3.0
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 7.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 7.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 7.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 7.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 7.0
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 26 7.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 7.0
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 7.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 7.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 7.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 7.0
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 26 7.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 7.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 7.0
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 9.3
SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit... 25 9.3
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 655 LHRYAHRHHQIYKRDCIQTDAPPVHEAAEINNNHSD 762
LHR+ H HH K D I++D+ EA+E N SD
Sbjct: 478 LHRHHHHHH---KTDLIESDSG--IEASESNRRKSD 508
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 367 PEAARQRDDGRRKFAHTSTSVKRHRN*EMCFYFMYYLHDLY 245
PE R + DG + AH + + + + + C YF + + DLY
Sbjct: 391 PEYVRLQLDGNERVAHINARITCYSSHQSCPYF-HIIWDLY 430
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 673 RHHQIYKRDCIQTDAPPVHEAAEINNNHSDGHY 771
RH K+ ++TDA V A ++ H D Y
Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKY 732
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 673 RHHQIYKRDCIQTDAPPVHEAAEINNNHSDGHY 771
RH K+ ++TDA V A ++ H D Y
Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKY 732
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 673 RHHQIYKRDCIQTDAPPVHEAAEINNNHSDGHY 771
RH K+ ++TDA V A ++ H D Y
Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKY 732
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 673 RHHQIYKRDCIQTDAPPVHEAAEINNNHSDGHY 771
RH K+ ++TDA V A ++ H D Y
Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKY 732
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 673 RHHQIYKRDCIQTDAPPVHEAAEINNNHSDGHY 771
RH K+ ++TDA V A ++ H D Y
Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKY 732
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 650 QNSTDMPTAITKFTSETAFKLMPHQY 727
+NSTD AIT + E+ F +P Y
Sbjct: 268 KNSTDRNYAITAYMDESLFDTIPDNY 293
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 673 RHHQIYKRDCIQTDAPPVHEAAEINNNHSDGHY 771
RH K+ ++TDA V A ++ H D Y
Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKY 732
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 573 MGSSVLSGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIV 454
+G S L+ LTK + T +Q++ + Y Y GI+
Sbjct: 399 LGDSTLTNTGLTKLKQAMARFTTNTQMYPLVYDTTYKGII 438
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 673 RHHQIYKRDCIQTDAPPVHEAAEINNNHSDGHY 771
RH K+ ++TDA V A ++ H D Y
Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKY 732
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 673 RHHQIYKRDCIQTDAPPVHEAAEINNNHSDGHY 771
RH K+ ++TDA V A ++ H D Y
Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKY 732
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 673 RHHQIYKRDCIQTDAPPVHEAAEINNNHSDGHY 771
RH K+ ++TDA V A ++ H D Y
Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKY 732
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 408 SYIGSPVNKQKLANQRRRGNET--TVAESSLTR 316
SY+GSP KQ N + N + T A S++T+
Sbjct: 277 SYVGSPALKQSKPNSLKSNNTSRKTSASSAITK 309
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 673 RHHQIYKRDCIQTDAPPVHEAAEINNNHSDGHY 771
RH K+ ++TDA V A ++ H D Y
Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKY 732
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 673 RHHQIYKRDCIQTDAPPVHEAAEINNNHSDGHY 771
RH K+ ++TDA V A ++ H D Y
Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKY 732
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 9.3
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +2
Query: 344 VSLPRRLW--LASFCLLTGEPI*LSITGRNTSPWAAPNSTIPRYIRK--*NTWKIWLLAV 511
+S P+ W + LL G S+TG N S WAA IR+ + WK + L
Sbjct: 673 ISFPKSSWKHVNPALLLGGAAQIPSVTGINYSTWAAVAFCFNYLIRRGYYSWWKKYNLIT 732
Query: 512 ASTM 523
A+ M
Sbjct: 733 AAAM 736
>SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit
Arc21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 650 QNSTDMPTAITKFTSETAFKLMPHQY 727
Q++ M T +T+F E A++L+ H Y
Sbjct: 125 QDAEIMRTYLTQFRQELAYRLLSHVY 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,913
Number of Sequences: 5004
Number of extensions: 46417
Number of successful extensions: 116
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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