Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_B13
(786 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical ... 81 1e-15
U53149-4|AAA96120.1| 956|Caenorhabditis elegans Patched related... 75 6e-14
Z69884-4|CAA93751.2| 913|Caenorhabditis elegans Hypothetical pr... 73 2e-13
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie... 73 2e-13
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie... 72 4e-13
U80447-8|AAB37812.3| 900|Caenorhabditis elegans Patched related... 71 9e-13
U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related... 71 1e-12
U28733-1|AAA68302.2| 982|Caenorhabditis elegans Patched related... 67 2e-11
Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr... 63 2e-10
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil... 59 3e-09
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil... 59 3e-09
AL032639-4|CAA21636.2| 858|Caenorhabditis elegans Hypothetical ... 52 4e-07
Z47074-1|CAA87375.2| 851|Caenorhabditis elegans Hypothetical pr... 51 1e-06
AL132853-3|CAB60438.1| 859|Caenorhabditis elegans Hypothetical ... 51 1e-06
AL034393-26|CAI59121.1| 936|Caenorhabditis elegans Hypothetical... 51 1e-06
AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched relat... 50 2e-06
Z19155-4|CAA79560.3| 844|Caenorhabditis elegans Hypothetical pr... 48 6e-06
AF067945-12|AAC17680.1| 840|Caenorhabditis elegans Patched rela... 48 6e-06
AF016653-2|AAC48225.2| 914|Caenorhabditis elegans Patched relat... 48 1e-05
AF016429-4|AAB65363.1| 881|Caenorhabditis elegans Patched relat... 48 1e-05
Z82089-1|CAB05002.1| 983|Caenorhabditis elegans Hypothetical pr... 45 7e-05
Z81511-2|CAB04167.1| 983|Caenorhabditis elegans Hypothetical pr... 45 7e-05
Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U23176-2|AAC46717.2| 667|Caenorhabditis elegans Patched family ... 42 7e-04
AL132949-24|CAB61102.1| 860|Caenorhabditis elegans Hypothetical... 42 7e-04
AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched relat... 40 0.002
U88182-2|AAB42308.4| 961|Caenorhabditis elegans Patched related... 39 0.004
AC024847-6|AAF60855.1| 909|Caenorhabditis elegans Patched relat... 35 0.076
AF100662-2|AAC68976.1| 478|Caenorhabditis elegans Hypothetical ... 30 2.2
AF039042-5|AAC48246.1| 307|Caenorhabditis elegans Hypothetical ... 29 2.9
AF067216-9|AAC17520.2| 646|Caenorhabditis elegans Hypothetical ... 29 3.8
AC006678-2|AAK68392.2| 315|Caenorhabditis elegans Hypothetical ... 29 5.0
AC006678-1|AAU20842.1| 337|Caenorhabditis elegans Hypothetical ... 29 5.0
Z66519-10|CAD59139.1| 446|Caenorhabditis elegans Hypothetical p... 28 8.7
Z66519-9|CAA91380.1| 448|Caenorhabditis elegans Hypothetical pr... 28 8.7
AF098999-4|AAC68729.1| 659|Caenorhabditis elegans Hypothetical ... 28 8.7
>AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical
protein Y39A1B.2 protein.
Length = 1003
Score = 80.6 bits (190), Expect = 1e-15
Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 4/127 (3%)
Frame = -1
Query: 744 NLG--GLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXADALLRM 571
N+G G M +W + L+ +S+V +VM++G V+F +HL ++F+ +AL +
Sbjct: 744 NIGILGFMTFWSVRLDFISMVTIVMSIGFCVDFAAHLAYNFAKGQNMDGSERMRNALYAV 803
Query: 570 GSSVLSGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLS--YIG 397
G+ +L T T G+ +A+A+S +F+ F + L ++L GA HGLV LPV+LS Y G
Sbjct: 804 GAPILMSATSTII-GVSFMASAESYVFRSFLKTIML-VILLGALHGLVILPVLLSMFYCG 861
Query: 396 SPVNKQK 376
K K
Sbjct: 862 GSSKKAK 868
>U53149-4|AAA96120.1| 956|Caenorhabditis elegans Patched related
family protein 1 protein.
Length = 956
Score = 74.9 bits (176), Expect = 6e-14
Identities = 41/130 (31%), Positives = 73/130 (56%)
Frame = -1
Query: 735 GLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXADALLRMGSSVL 556
G M +WG++L++VS++ ++M +G SV+ +H+ ++FS S A AL +G V
Sbjct: 816 GFMSFWGVNLDSVSIITVIMCIGFSVDLSAHIAYAFSQSYGNSHARAVA-ALETLGWPVF 874
Query: 555 SGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLSYIGSPVNKQK 376
G + T G I++L S I Q+F+ ++L ++ F HGL+FLP+ L + V ++
Sbjct: 875 LGASSTVLG-ILLLTLVDSYIVQIFFKTVFL-VINFSILHGLIFLPIFLMKVVREVKEES 932
Query: 375 LANQRRRGNE 346
+ + NE
Sbjct: 933 PRDDQSVENE 942
>Z69884-4|CAA93751.2| 913|Caenorhabditis elegans Hypothetical protein
F31F6.5 protein.
Length = 913
Score = 73.3 bits (172), Expect = 2e-13
Identities = 39/115 (33%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Frame = -1
Query: 744 NLG--GLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXADALLRM 571
N+G G M WG++L+AVS+++++M++G +V+ +H++++F V+ AL +
Sbjct: 786 NIGVFGYMTLWGVNLDAVSMISIIMSIGFAVDLSAHIIYAF-VTSHGDTKQRVIGALETL 844
Query: 570 GSSVLSGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLS 406
G + G + T GI +L T + I VF+ ++L +L GA HGL F+P+ LS
Sbjct: 845 GWPIFQGASST-IAGISILYTVDAYIILVFFKTIWL-TMLIGAIHGLFFIPIFLS 897
>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human niemann
pick c disease)related protein 1 protein.
Length = 1383
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/112 (32%), Positives = 64/112 (57%)
Frame = -1
Query: 729 MYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXADALLRMGSSVLSG 550
MY + I +NA+S NLVM+ GI +EF +++ ++ S + +G +LSG
Sbjct: 1174 MYIFNIPVNALSATNLVMSSGILIEFSVNVLKGYACSLRQRAKDRAESTVGSIGPIILSG 1233
Query: 549 ITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLSYIGS 394
+T G + L+ A QI V++F+++L ++ A H L+ LP++L++ GS
Sbjct: 1234 PVVTMAGSTMFLSGAHLQIITVYFFKLFLITIVSSAVHALIILPILLAFGGS 1285
>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human niemann
pick c disease)related protein 2 protein.
Length = 1274
Score = 72.1 bits (169), Expect = 4e-13
Identities = 39/112 (34%), Positives = 62/112 (55%)
Frame = -1
Query: 729 MYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXADALLRMGSSVLSG 550
MY GI++N VS++N+ M++GI+VEF ++H F S AL+ GS+ LSG
Sbjct: 1126 MYLLGITVNVVSVINMAMSLGIAVEFFGQMLHGFYNSKKPKREERAFAALVSNGSTTLSG 1185
Query: 549 ITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLSYIGS 394
I L+ A S++ ++ +GI L A HG+V++P +L+ GS
Sbjct: 1186 IFPAIMITAGCLSFADSRVLITYFCNQLVGIGLVCAVHGVVYMPTLLAIFGS 1237
>U80447-8|AAB37812.3| 900|Caenorhabditis elegans Patched related
family protein 10 protein.
Length = 900
Score = 70.9 bits (166), Expect = 9e-13
Identities = 37/114 (32%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Frame = -1
Query: 735 GLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXADALLRMGSSVL 556
G M W ++L+A+S++ ++M+VG SV++ +H+ +++ +S DAL +G V
Sbjct: 768 GFMTLWNVNLDAISMITIIMSVGFSVDYSAHITYAYVISKESTTSARVCDALGDLGWPVA 827
Query: 555 SGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLS-YIG 397
G T + VL+ + + F+ ++L I + G HGLVFLP+MLS ++G
Sbjct: 828 QGAMSTILA-VSVLSDVPAYMIVTFFKTVFLAISI-GFLHGLVFLPLMLSVFVG 879
>U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related
family protein 2 protein.
Length = 933
Score = 70.5 bits (165), Expect = 1e-12
Identities = 37/110 (33%), Positives = 62/110 (56%)
Frame = -1
Query: 735 GLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXADALLRMGSSVL 556
G M WG++L+A+S++ ++M++G SV++ +H+ + + VS +AL +G +
Sbjct: 747 GYMTLWGVNLDAISMITIIMSIGFSVDYSAHIAYGYVVSREDTAAGRVKEALSALGWPLS 806
Query: 555 SGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLS 406
G T + VLA + + F+ + L I L G HGLVFLPV+LS
Sbjct: 807 QGAMSTIIA-VSVLADIPAYMIVTFFKTVVLSISL-GLLHGLVFLPVLLS 854
>U28733-1|AAA68302.2| 982|Caenorhabditis elegans Patched related
family protein 6 protein.
Length = 982
Score = 66.9 bits (156), Expect = 2e-11
Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
Frame = -1
Query: 735 GLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSF-SVSXXXXXXXXXADALLRMGSSV 559
G + W + L+ +S++ ++M++G S+EF +H+ H F S DA+ ++ V
Sbjct: 833 GFLSLWSVKLDPISMITIIMSIGFSIEFSAHITHGFVSNDSNLSAFDRCVDAMEKLAWPV 892
Query: 558 LSGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLSYIGSPVNK- 382
+ G +L+ G+ VLA S + VF+ + L +++ GA H L+ LP++LS + +
Sbjct: 893 VHG-SLSTILGVFVLAFIDSYMVLVFFKTISL-VLIIGAWHALMLLPILLSMCIPVIERL 950
Query: 381 ---QKLANQRRR 355
K A+ RRR
Sbjct: 951 SDASKKASDRRR 962
>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical protein
ZK675.1 protein.
Length = 1405
Score = 63.3 bits (147), Expect = 2e-10
Identities = 39/115 (33%), Positives = 63/115 (54%)
Frame = -1
Query: 741 LGGLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXADALLRMGSS 562
L G M GI LN VS V L+ AVGI VEF H+V SF ++ + A+ R+
Sbjct: 1219 LAGFMGLVGIKLNPVSAVTLITAVGIGVEFTVHVVVSF-LTALGTRSQRTSSAVDRVFVP 1277
Query: 561 VLSGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLSYIG 397
V+ G + + GI++L ++ + ++F + ++ G +GL+ LPV+LS+ G
Sbjct: 1278 VIHG-SFSTLLGILMLGFSEFEFVVKYFFIVMTALICIGIINGLILLPVLLSWFG 1331
>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
protein 3, isoform b protein.
Length = 1361
Score = 59.3 bits (137), Expect = 3e-09
Identities = 36/115 (31%), Positives = 58/115 (50%)
Frame = -1
Query: 741 LGGLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXADALLRMGSS 562
LGG M GI +N +S V L+ AVGI VEF +H+ +F ++ L M
Sbjct: 1177 LGGFMGLMGIKMNPISAVTLICAVGIGVEFTAHVELAF-LTALGTIDQRLESCLQHMFVP 1235
Query: 561 VLSGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLSYIG 397
V G ++ F G+++L ++ ++F +V G +GL LPV+L+ +G
Sbjct: 1236 VYHG-AISTFLGVVMLVFSEFDFVVTYFFYTMTLLVALGVFNGLCVLPVILTLVG 1289
>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
protein 3, isoform a protein.
Length = 1358
Score = 59.3 bits (137), Expect = 3e-09
Identities = 36/115 (31%), Positives = 58/115 (50%)
Frame = -1
Query: 741 LGGLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXADALLRMGSS 562
LGG M GI +N +S V L+ AVGI VEF +H+ +F ++ L M
Sbjct: 1174 LGGFMGLMGIKMNPISAVTLICAVGIGVEFTAHVELAF-LTALGTIDQRLESCLQHMFVP 1232
Query: 561 VLSGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLSYIG 397
V G ++ F G+++L ++ ++F +V G +GL LPV+L+ +G
Sbjct: 1233 VYHG-AISTFLGVVMLVFSEFDFVVTYFFYTMTLLVALGVFNGLCVLPVILTLVG 1286
>AL032639-4|CAA21636.2| 858|Caenorhabditis elegans Hypothetical
protein Y38F1A.3 protein.
Length = 858
Score = 52.4 bits (120), Expect = 4e-07
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Frame = -1
Query: 744 NLG--GLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXADALLRM 571
NLG G + + I L+ +S+ L+MA+G SV+F +H+ + AL +
Sbjct: 682 NLGVFGCLVYMNIDLDPISMTTLLMAIGFSVDFVAHITWHYYKGDFHSKRARIRHALAGI 741
Query: 570 GSSVLSGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLS 406
+ T T I VLA + + QVF ++ + ++ G HGLV LP++ S
Sbjct: 742 AWPMFQAGTSTML-AITVLALVHAYMVQVF-VKVVVLVIFLGMFHGLVVLPIVFS 794
>Z47074-1|CAA87375.2| 851|Caenorhabditis elegans Hypothetical protein
K07C10.1 protein.
Length = 851
Score = 50.8 bits (116), Expect = 1e-06
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Frame = -1
Query: 735 GLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVS---XXXXXXXXXADALLRMGS 565
G + WG +L+ V++++++MA+G SV++ +H+ + + + L +G
Sbjct: 712 GFLSIWGQNLDPVTMIDVIMAIGFSVDYSAHVCYHYYCAREQHLGSKHEVITSVLQAVGR 771
Query: 564 SVLSGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLSYIGSPVN 385
V+ +LT + L + Q F + L + FG HGL FLPV+L +I P+N
Sbjct: 772 PVVEA-SLTTLLCMAPLFVVPVYMIQSFAKTVTL-VTSFGLLHGLFFLPVVLYFI--PLN 827
Query: 384 KQK 376
QK
Sbjct: 828 AQK 830
>AL132853-3|CAB60438.1| 859|Caenorhabditis elegans Hypothetical
protein Y80D3A.7 protein.
Length = 859
Score = 50.8 bits (116), Expect = 1e-06
Identities = 30/111 (27%), Positives = 53/111 (47%)
Frame = -1
Query: 735 GLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXADALLRMGSSVL 556
G + WG+ ++ VS +L+M++G SV+ +H+ + + +G L
Sbjct: 696 GFLSIWGVGMDPVSTASLLMSIGFSVDISAHISYHYYQVDKPTARQKLEHVYSHIGWPTL 755
Query: 555 SGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLSY 403
G L+ ++ + A S + VF + L + FG HGL+ LPV LS+
Sbjct: 756 QG-GLSTMLAMMPIVLAPSYLGMVFLKTVIL-VCTFGLIHGLIVLPVFLSF 804
>AL034393-26|CAI59121.1| 936|Caenorhabditis elegans Hypothetical
protein Y18D10A.7c protein.
Length = 936
Score = 50.8 bits (116), Expect = 1e-06
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Frame = -1
Query: 735 GLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSF------SVSXXXXXXXXXADALLR 574
G M + G+SL+A S++ + M+VG SV+F +H+ +++ + L
Sbjct: 804 GTMSFLGVSLDATSMITVAMSVGFSVDFAAHVSYAYMTESGAQIPGKSAIYSRFCHTLGT 863
Query: 573 MGSSVLSGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVML 409
+G V +++ G+ L S + Q FR + ++LFG H LVFLP++L
Sbjct: 864 IGWPVTQA-SVSVLLGVSSLYLVDSYVVQT-CFRTVVLVILFGTTHALVFLPLLL 916
>AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched related
family protein 4 protein.
Length = 960
Score = 49.6 bits (113), Expect = 2e-06
Identities = 32/111 (28%), Positives = 58/111 (52%)
Frame = -1
Query: 738 GGLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXADALLRMGSSV 559
GGL G L++VS+ +VMA+G++V++ H+ + + S AD L +G V
Sbjct: 827 GGLALL-GSDLDSVSMGCIVMAIGLAVDYSVHICYRYHRSEYKTAQEKVADTLASVGWPV 885
Query: 558 LSGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLS 406
+ T G + + + + +VF+ +YL + + G H LV+LP ++S
Sbjct: 886 TQAVCSTLVG-LAITVFVPAYLVRVFFQTVYL-VNIIGLFHALVWLPQLIS 934
>Z19155-4|CAA79560.3| 844|Caenorhabditis elegans Hypothetical protein
F54G8.5 protein.
Length = 844
Score = 48.4 bits (110), Expect = 6e-06
Identities = 31/103 (30%), Positives = 51/103 (49%)
Frame = -1
Query: 708 LNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXADALLRMGSSVLSGITLTKFG 529
L+ +S++ +VM+VG SV++ +H F + LL M +L T G
Sbjct: 719 LDIISMITIVMSVGFSVDYVTHTTFHFVIQRDNRLEK----CLLVMTEPILQSALSTAIG 774
Query: 528 GIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLSYI 400
+ +L+ S I + F ++ +V G HGL+FLPV+L I
Sbjct: 775 -VSLLSFVHSYIVRTFVNTVFF-VVGLGILHGLIFLPVLLDTI 815
>AF067945-12|AAC17680.1| 840|Caenorhabditis elegans Patched related
family protein 15 protein.
Length = 840
Score = 48.4 bits (110), Expect = 6e-06
Identities = 28/109 (25%), Positives = 55/109 (50%)
Frame = -1
Query: 735 GLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXADALLRMGSSVL 556
GL+ WG L+ +++VN++M++G ++F +H+ S DA+ +G V+
Sbjct: 719 GLLSLWGADLDPMTVVNILMSIGQCIDFATHVGIRIYRSEYSDPDERIRDAMGAIGWPVV 778
Query: 555 SGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVML 409
T T +++L S + + R + +V G HGL+ LP+++
Sbjct: 779 QAGTSTLLAIVVMLMVPSSAV--RMFARTSVLVVGTGFFHGLIILPIIV 825
>AF016653-2|AAC48225.2| 914|Caenorhabditis elegans Patched related
family protein 3 protein.
Length = 914
Score = 47.6 bits (108), Expect = 1e-05
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Frame = -1
Query: 735 GLMYWWGISLNAVSLVNLVMAVGISVEFCSHL-VHSFSVSXXXXXXXXXADALLRMGSSV 559
G+M WWG L+ + + VM++G SV+ SH+ H + + +
Sbjct: 778 GIMSWWGADLDPIMMSATVMSIGFSVDIPSHVSYHFYQTAKDTSDIRRRLQMTIEAVGFP 837
Query: 558 LSGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLSYIGSPVNKQ 379
+ +L+ ++ L + Q+F M L +V+ G HG++ +PV+ + + + K
Sbjct: 838 IFEASLSTSLCVMSLFFVDLNMAQIFAKCMLL-VVVIGMVHGMLVMPVIFALLDTVPRKL 896
Query: 378 KLANQRRRGNETTV 337
K Q T V
Sbjct: 897 KPRKQHLASTVTVV 910
>AF016429-4|AAB65363.1| 881|Caenorhabditis elegans Patched related
family protein 16 protein.
Length = 881
Score = 47.6 bits (108), Expect = 1e-05
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Frame = -1
Query: 744 NLG--GLMYWWGISLNAVSLVNLVMAVGISVEFCSHL-VHSFSVSXXXXXXXXXADALLR 574
N+G GL+ W ++L+ +++ +M++G SV+F +H+ H + ADAL
Sbjct: 649 NIGVFGLLSMWRVNLDPITMCTTLMSIGFSVDFTAHISYHYYRNPTSWTTDERLADALKS 708
Query: 573 MGSSVLSGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVML 409
+G ++ + T I L S + VF + L + + G HG++FLP +L
Sbjct: 709 IGWPMIQAASSTVL-CIFPLMFNTSYMVWVF-VKTILLVTVLGLLHGIIFLPALL 761
>Z82089-1|CAB05002.1| 983|Caenorhabditis elegans Hypothetical protein
ZK270.1 protein.
Length = 983
Score = 44.8 bits (101), Expect = 7e-05
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Frame = -1
Query: 735 GLMYWWGISLNAVSLVNLVMAVGISVEFCSHL-VHSFSVSXXXXXXXXXADALLRMGSSV 559
G + WW + L+ +++ +++++G SV+ +H+ H + S + L SSV
Sbjct: 823 GFLSWWKVDLDPITMAAMIISIGFSVDIPAHVSYHYYQASIQEGPMSPPSSRLANCLSSV 882
Query: 558 LSGITLTKFGGIIVLAT---AKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLSYIGS 394
I+ + + + +VF M L +VL HGLVFLP +L + S
Sbjct: 883 AFPALQAALSTILCVCSLLFVNLYMAEVFVKTMVLCVVLCNL-HGLVFLPAILILLDS 939
>Z81511-2|CAB04167.1| 983|Caenorhabditis elegans Hypothetical protein
ZK270.1 protein.
Length = 983
Score = 44.8 bits (101), Expect = 7e-05
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Frame = -1
Query: 735 GLMYWWGISLNAVSLVNLVMAVGISVEFCSHL-VHSFSVSXXXXXXXXXADALLRMGSSV 559
G + WW + L+ +++ +++++G SV+ +H+ H + S + L SSV
Sbjct: 823 GFLSWWKVDLDPITMAAMIISIGFSVDIPAHVSYHYYQASIQEGPMSPPSSRLANCLSSV 882
Query: 558 LSGITLTKFGGIIVLAT---AKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLSYIGS 394
I+ + + + +VF M L +VL HGLVFLP +L + S
Sbjct: 883 AFPALQAALSTILCVCSLLFVNLYMAEVFVKTMVLCVVLCNL-HGLVFLPAILILLDS 939
>Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical protein
R09H10.4 protein.
Length = 877
Score = 43.2 bits (97), Expect = 2e-04
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Frame = -1
Query: 735 GLMYWWGISLNAVSLVNLVMAVGISVEFCSHLV-HSFSV---SXXXXXXXXXADALLRMG 568
G + WGI L+ +S+ L+M++G SV+F +H+ H F A +L +G
Sbjct: 723 GFLSMWGIDLDPISMACLIMSIGFSVDFPAHITFHYFREGLHDPQSTPAKRVARSLAAIG 782
Query: 567 SSVLS-GITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVML 409
+L G++ F ++ L + + +VF M L +V G HGL +P L
Sbjct: 783 FPLLQCGLSTILF--VLCLLFVPTYMGEVFVKTMIL-VVTLGLIHGLFIVPAFL 833
>U23176-2|AAC46717.2| 667|Caenorhabditis elegans Patched family
protein 2 protein.
Length = 667
Score = 41.5 bits (93), Expect = 7e-04
Identities = 22/38 (57%), Positives = 24/38 (63%)
Frame = -1
Query: 741 LGGLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSF 628
L G M GI LN VS V L+ AVGI VEF H+V SF
Sbjct: 590 LAGFMGLVGIKLNPVSAVTLITAVGIGVEFTVHVVVSF 627
>AL132949-24|CAB61102.1| 860|Caenorhabditis elegans Hypothetical
protein Y53F4B.28 protein.
Length = 860
Score = 41.5 bits (93), Expect = 7e-04
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Frame = -1
Query: 729 MYWWGISLNAVSLVNLVMAVGISVEFCSHL-------VHSFSVSXXXXXXXXXADALLRM 571
++ W ++L+AVSL++++M++G SV++ +H+ VH D LL
Sbjct: 718 LHLWNVNLDAVSLISMLMSIGFSVDYSAHVCYHYFAHVHEDEQLWRSHNYAETRDRLLST 777
Query: 570 GSSVLSGIT---LTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVM 412
V + L+ G+ L ++ + VF+ + L + + G H L+ LPV+
Sbjct: 778 FRGVAWPVMQSGLSTILGMFPLMFVRAYVVAVFWKTVIL-VGILGMLHALILLPVI 832
>AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched related
family protein 11 protein.
Length = 820
Score = 40.3 bits (90), Expect = 0.002
Identities = 30/112 (26%), Positives = 53/112 (47%)
Frame = -1
Query: 741 LGGLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXADALLRMGSS 562
+GGL W G L+ V V++++A G SV++ +H+ ++F +L M
Sbjct: 680 VGGLSLW-GADLDPVIQVDVLLATGFSVDYTAHVAYNF-FRARGTPQERVYSSLAEMAMP 737
Query: 561 VLSGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLS 406
+ L+ F ++ L + F ++L +V G HGL LPV+L+
Sbjct: 738 MCEA-GLSTFLCMLPLIFVPTYAIVCFAKTVFL-VVAIGLLHGLFILPVILA 787
>U88182-2|AAB42308.4| 961|Caenorhabditis elegans Patched related
family protein 5 protein.
Length = 961
Score = 39.1 bits (87), Expect = 0.004
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Frame = -1
Query: 735 GLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXADALLRMGSSVL 556
G + W L+ V + ++M++G+SV+F +H+ + F ++ + GS+
Sbjct: 792 GFLSLWSFDLDPVVMAAVLMSIGLSVDFIAHVAYHFQLAHRKEIRNGKIKKIPLKGSTER 851
Query: 555 SGITLTKF------GGIIVLATAKSQIFQ------VFYFRMYLGIVLFGAAHGLVFLPVM 412
TL G+ + +F+ VF ++L +V FG HGL+ LP
Sbjct: 852 LEHTLGAVAWPMIQAGVSTICCILPLLFRASYSPSVFVAAIFL-VVTFGMLHGLLILPTF 910
Query: 411 LSYIGSPV 388
L+ + V
Sbjct: 911 LAALPESV 918
>AC024847-6|AAF60855.1| 909|Caenorhabditis elegans Patched related
family protein 21 protein.
Length = 909
Score = 34.7 bits (76), Expect = 0.076
Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Frame = -1
Query: 735 GLMYWWGISLNAVSLVNLVMAVGISVEFCSHLVHSFSVSXXXXXXXXXAD--ALLRMGSS 562
G + +W + L+ V+L +++++G+SV+F +H+ + V + S
Sbjct: 740 GYLCFWDLDLDPVTLCAVIVSIGMSVDFVAHVACHYQVRYKEFEEKGVLKRIEMKTPESR 799
Query: 561 VLSGIT-----LTKFGGIIVLATAKSQIFQ----VFYFRMYLGIVLFGAAHGLVFLPVML 409
V++ ++ + + +L I Q + + + L +V++G HGLV LP +L
Sbjct: 800 VVNSLSNVLWPMVQSASSTLLCVLPLGILQNYLPMVFVKTILLVVIWGMFHGLVLLPCIL 859
Query: 408 S 406
+
Sbjct: 860 A 860
>AF100662-2|AAC68976.1| 478|Caenorhabditis elegans Hypothetical
protein H34C03.1 protein.
Length = 478
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = +1
Query: 364 LVGQLLFV--NRRTDIAEHNRQEYESVGRTEQHNPEVHPEVEHLEDLALGRGEHDDAAEL 537
L G+L V RRTD A+ R ++H E + E E +A G GE D +
Sbjct: 385 LFGELKMVLEPRRTDFAKRERTALAKFYGVDEHQLEQKEDEETFEAIASGDGEDPDPYDW 444
Query: 538 ---GERDAGQHGRAH 573
E AG H A+
Sbjct: 445 RKDAEMSAGIHHDAN 459
>AF039042-5|AAC48246.1| 307|Caenorhabditis elegans Hypothetical
protein ZK697.3 protein.
Length = 307
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = -1
Query: 570 GSSVLSGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLSY 403
G + S +T+T+F +I+L K Q+F ++ ++LF L+F+ +S+
Sbjct: 116 GQNYKSKVTITQFLPLIILEKIKKQMFSC----IFSSVILFYLTKVLIFVTAFMSF 167
>AF067216-9|AAC17520.2| 646|Caenorhabditis elegans Hypothetical
protein C35E7.4 protein.
Length = 646
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -3
Query: 361 AARQRDDGRRKFAHTSTSVKRHRN*EMCFYFMYYLHDLYYNIM*LMRRDFFY 206
A + +G + HTS ++ H N E C +Y +H+L + ++ + R FY
Sbjct: 380 ALNEETEGYYYYNHTSGIIEEHENCEDC-RGVYPIHNLSHRLVIMSARSPFY 430
>AC006678-2|AAK68392.2| 315|Caenorhabditis elegans Hypothetical
protein R05G9.2a protein.
Length = 315
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = -1
Query: 549 ITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLF 448
+ LT GG V AT SQIF VFY +GI LF
Sbjct: 134 LLLTIGGGFKVPATVGSQIFAVFY--CLIGIPLF 165
>AC006678-1|AAU20842.1| 337|Caenorhabditis elegans Hypothetical
protein R05G9.2b protein.
Length = 337
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = -1
Query: 549 ITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLF 448
+ LT GG V AT SQIF VFY +GI LF
Sbjct: 156 LLLTIGGGFKVPATVGSQIFAVFY--CLIGIPLF 187
>Z66519-10|CAD59139.1| 446|Caenorhabditis elegans Hypothetical
protein B0334.11b protein.
Length = 446
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -1
Query: 564 SVLSGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLSYIGSP 391
S++ + T GG + ++ F +F+ +Y G L +FL +ML I +P
Sbjct: 254 SIIEVFSETISGGFFAFFSGSAKHFNLFFRNLYDGAPLIAQIVMTIFLVLMLGAIRTP 311
>Z66519-9|CAA91380.1| 448|Caenorhabditis elegans Hypothetical
protein B0334.11a protein.
Length = 448
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -1
Query: 564 SVLSGITLTKFGGIIVLATAKSQIFQVFYFRMYLGIVLFGAAHGLVFLPVMLSYIGSP 391
S++ + T GG + ++ F +F+ +Y G L +FL +ML I +P
Sbjct: 256 SIIEVFSETISGGFFAFFSGSAKHFNLFFRNLYDGAPLIAQIVMTIFLVLMLGAIRTP 313
>AF098999-4|AAC68729.1| 659|Caenorhabditis elegans Hypothetical
protein W04C9.6 protein.
Length = 659
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = +1
Query: 358 PPLVGQLLFVNRRTDIAEHNRQEYESVGRTEQHNPEVHPEVEHLED 495
PP+VG ++ ++ E + +YE+ T + + + PE +H+++
Sbjct: 550 PPIVGSSSAISSIQNLLEKQQNQYETAPETPRWDRQ-EPEYQHIDE 594
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,373,391
Number of Sequences: 27780
Number of extensions: 269718
Number of successful extensions: 771
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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