Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_B13
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 403 IAEHNRQEYESVGRTEQHNPEVHP 474
           +A H+     ++GR+  H+P V+P
Sbjct: 283 LASHHSHLSSALGRSACHSPGVYP 306


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +1

Query: 334 GDRRLVAAPPLVGQLLFVNRRTDIAEHNRQEYESVGRTEQHNPEVHPEVEHLEDLALGRG 513
           GD+ L+ +   + + L ++RR   A     +    G   + N  VH E   L DL  G  
Sbjct: 6   GDQSLLGS---IARSLSLDRR---ARRGAADLSLAGNATKVNT-VHEEESSLNDLFSGPE 58

Query: 514 EHDDAAELG 540
           E     ELG
Sbjct: 59  ESSGGVELG 67


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 21  CRSVHLSHNLWTNTFSKLSPPLKSALPVL 107
           C S+ LS  ++    +++ PP   A+P+L
Sbjct: 284 CSSILLSLTVFFLLLAEIIPPTSLAIPLL 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,696
Number of Sequences: 438
Number of extensions: 3444
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)