Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_B10
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 209 3e-55
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 162 5e-41
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 143 3e-35
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 138 8e-34
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 115 7e-27
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 114 1e-26
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 111 1e-25
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 97 3e-21
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 96 4e-21
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 95 1e-20
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 90 4e-19
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 89 7e-19
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 85 1e-17
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 85 1e-17
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 84 2e-17
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 84 3e-17
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 82 8e-17
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 81 2e-16
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 80 3e-16
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 72 1e-13
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 69 8e-13
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 67 3e-12
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 64 2e-11
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 64 2e-11
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 51 2e-07
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 50 3e-07
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 50 4e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 49 7e-07
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 46 6e-06
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 33 0.047
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 32 0.11
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 27 2.4
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 3.1
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 27 3.1
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 27 3.1
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 4.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 7.2
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 25 9.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 209 bits (511), Expect = 3e-55
Identities = 92/187 (49%), Positives = 137/187 (73%)
Frame = -2
Query: 744 AKDYLGEFVQVNVGXTELSANRNIQQIVHVCEQDEKAEKFTEIMHKISGLGFGKTLVFTN 565
A+DYL +++QV VG +L+A+ NI+QIV V + +K + + + ++ K L+FT
Sbjct: 318 ARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTG 377
Query: 564 TKKSVDYLERVLRGNGWPALGIHGDRTQLQRDMIINKFKTGKTNILVATDVAARGLDVDG 385
TK+ D + R LR +GWPAL IHGD+ Q +RD ++N+F+TGK+ I+VATDVA+RG+DV G
Sbjct: 378 TKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKG 437
Query: 384 VTHVVNYDYPNTSEDYIHRIGRTGRQDNKGISHSILTEENARQAKDLIEVLKEAKQDIPK 205
+THV NYD+P +EDY+HRIGRTGR KG +++ T +NA+QA++L+ +L EAKQDI
Sbjct: 438 ITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDP 497
Query: 204 ELYDLAR 184
+L ++AR
Sbjct: 498 KLEEMAR 504
Score = 31.1 bits (67), Expect = 0.19
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3
Query: 797 ERXILMFSATWPKEVRTLQK 738
+R +MFSATWPKEV+ L +
Sbjct: 300 DRQTVMFSATWPKEVQRLAR 319
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 162 bits (394), Expect = 5e-41
Identities = 81/187 (43%), Positives = 118/187 (63%)
Frame = -2
Query: 744 AKDYLGEFVQVNVGXTELSANRNIQQIVHVCEQDEKAEKFTEIMHKISGLGFGKTLVFTN 565
A+D+L ++V ++VG ++ Q++VHV E EK +I+H + G TL+F
Sbjct: 382 ARDFLKDYVFLSVGRVGSTSENITQKVVHV-EDSEKRSYLLDILHTLPPEGL--TLIFVE 438
Query: 564 TKKSVDYLERVLRGNGWPALGIHGDRTQLQRDMIINKFKTGKTNILVATDVAARGLDVDG 385
TK+ D L L + +PA IHGDRTQ +R+ + F++G+T+I+VAT VA+RGLD+
Sbjct: 439 TKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPN 498
Query: 384 VTHVVNYDYPNTSEDYIHRIGRTGRQDNKGISHSILTEENARQAKDLIEVLKEAKQDIPK 205
VTHV+NYD P +DY+HRIGRTGR N G + + N AK+LIE+L+EA Q+ P
Sbjct: 499 VTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPS 558
Query: 204 ELYDLAR 184
L +AR
Sbjct: 559 FLIAMAR 565
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -3
Query: 797 ERXILMFSATWPKEVRTLQK 738
ER LMFSAT+P++++ L +
Sbjct: 364 ERQTLMFSATFPRDIQLLAR 383
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 143 bits (346), Expect = 3e-35
Identities = 77/186 (41%), Positives = 113/186 (60%), Gaps = 3/186 (1%)
Frame = -2
Query: 744 AKDYLGEFVQVNVGXTELSANRNIQQIVHVCEQDEKAEKFTEIM---HKISGLGFGKTLV 574
A +L + V++ +G EL+A++NI QIV + + E+ + + H SG K L+
Sbjct: 363 AATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILI 422
Query: 573 FTNTKKSVDYLERVLRGNGWPALGIHGDRTQLQRDMIINKFKTGKTNILVATDVAARGLD 394
F KK +E L + +GIHGD +Q R +N FK+GK +LVATDVAARGLD
Sbjct: 423 FVLYKKEAARVEGTL-ARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLD 481
Query: 393 VDGVTHVVNYDYPNTSEDYIHRIGRTGRQDNKGISHSILTEENARQAKDLIEVLKEAKQD 214
+ V V+N +P T EDY+HRIGRTGR + KG + + T ++ A +L+ VL++AKQD
Sbjct: 482 IPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQD 541
Query: 213 IPKELY 196
IP+ L+
Sbjct: 542 IPEGLF 547
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = -3
Query: 794 RXILMFSATWPKEVRTLQKII*VNLSRSMLVXLSCLPTATYNKLSMYVNKTKKPRSLQR 618
R + FSATWP+ VR L L + + + A ++ V PRS +R
Sbjct: 346 RQTVFFSATWPESVRALAATF---LKDPVKITIGSDELAASQNITQIVEILDDPRSKER 401
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 138 bits (334), Expect = 8e-34
Identities = 73/190 (38%), Positives = 113/190 (59%), Gaps = 1/190 (0%)
Frame = -2
Query: 744 AKDYLGEFVQVNVGXTELSANRNIQQIVHVCEQDEKAEKFTEIMHKISGLGFG-KTLVFT 568
A+ L + V++ VG + A+ ++QIV V ++ K + E++ ++ +TLVF
Sbjct: 617 ARKVLKKPVEITVGGRSVVASE-VEQIVEVRPEESKFSRLLELLGELYNNQLDVRTLVFV 675
Query: 567 NTKKSVDYLERVLRGNGWPALGIHGDRTQLQRDMIINKFKTGKTNILVATDVAARGLDVD 388
+ ++S D L L G+ + IHG + Q RD I+ +K G ++L+AT V ARGLDV
Sbjct: 676 DRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVK 735
Query: 387 GVTHVVNYDYPNTSEDYIHRIGRTGRQDNKGISHSILTEENARQAKDLIEVLKEAKQDIP 208
+ VVNYD PN EDY+HR+GRTGR + G++ + +T E + A D+ + LK +KQ +P
Sbjct: 736 SLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVP 795
Query: 207 KELYDLARSF 178
KEL LA F
Sbjct: 796 KELQTLASQF 805
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 115 bits (277), Expect = 7e-27
Identities = 57/182 (31%), Positives = 105/182 (57%)
Frame = -2
Query: 735 YLGEFVQVNVGXTELSANRNIQQIVHVCEQDEKAEKFTEIMHKISGLGFGKTLVFTNTKK 556
++ + +++ V EL+ Q V V +++ K + ++ ++ + ++F NT++
Sbjct: 213 FMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVT---VTQAVIFCNTRR 269
Query: 555 SVDYLERVLRGNGWPALGIHGDRTQLQRDMIINKFKTGKTNILVATDVAARGLDVDGVTH 376
VD+L L + +HGD Q QRD ++++F+TG + IL+ TD+ ARG+DV V+
Sbjct: 270 KVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSL 329
Query: 375 VVNYDYPNTSEDYIHRIGRTGRQDNKGISHSILTEENARQAKDLIEVLKEAKQDIPKELY 196
V+NYD P E+YIHRIGR GR KG+S + +T ++ R +++ + +++P +
Sbjct: 330 VINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMPMNIA 389
Query: 195 DL 190
DL
Sbjct: 390 DL 391
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 114 bits (275), Expect = 1e-26
Identities = 64/190 (33%), Positives = 105/190 (55%), Gaps = 1/190 (0%)
Frame = -2
Query: 744 AKDYLGEFVQVNVGXTELSANRNIQQIVHVCEQDEKAEKFTEIMHKISGLGFGKTLVFTN 565
AK YL E V + +G + +R Q++ + + +K + EI+ S ++F N
Sbjct: 467 AKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILE--SNRFSPPIIIFVN 524
Query: 564 TKKSVDYLERVLRGNGWPALGIHGDRTQLQRDMIINKFKTGKTNILVATDVAARGLDVDG 385
K++++ + + L GW A+ +HG ++Q QR+ I + + +ILVATD+A RG+D+
Sbjct: 525 LKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPN 584
Query: 384 VTHVVNYDYPNTSEDYIHRIGRTGRQDNKGISHSILTEENARQAKDLIEVL-KEAKQDIP 208
V+ V+NY+ + EDY HRIGRTGR G + + L E+ DL +L + AK IP
Sbjct: 585 VSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHIP 644
Query: 207 KELYDLARSF 178
EL + +F
Sbjct: 645 DELRNHEAAF 654
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 111 bits (266), Expect = 1e-25
Identities = 52/152 (34%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
Frame = -2
Query: 642 EKAE-KFTEIMHKISGLGFGKTLVFTNTKKSVDYLERVLRGNGWPALGIHGDRTQLQRDM 466
EK E KF + L + ++F N+++ VD+L +R + +HG+ Q +RD
Sbjct: 242 EKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDA 301
Query: 465 IINKFKTGKTNILVATDVAARGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQDNKGISH 286
I+ F+ G + +L+ TD+ ARG+DV V+ V+NYD P E+YIHRIGR+GR KG++
Sbjct: 302 IMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAI 361
Query: 285 SILTEENARQAKDLIEVLKEAKQDIPKELYDL 190
+ +T E+ R +D+ + ++P + D+
Sbjct: 362 NFVTNEDVRILRDIEQYYSTVIDEMPMNIGDM 393
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 96.7 bits (230), Expect = 3e-21
Identities = 52/134 (38%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 642 EKAEKFTEIMHKISGLGF-GKTLVFTNTKKSVDYLERVLRGNGWPALGIHGDRTQLQRDM 466
+K ++ E+ K S G TLVF TK V+Y+ +L G+ I+G Q R
Sbjct: 328 KKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLN 387
Query: 465 IINKFKTGKTNILVATDVAARGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQDNKGISH 286
IN F+ GKTN+LV TDVA+RG+D+ + +V+NYD+P + ++HR+GRT R G ++
Sbjct: 388 EINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAY 447
Query: 285 SILTEENARQAKDL 244
S++ E+A DL
Sbjct: 448 SLVRAEDAGYLLDL 461
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 96.3 bits (229), Expect = 4e-21
Identities = 49/120 (40%), Positives = 72/120 (60%)
Frame = -2
Query: 630 KFTEIMHKISGLGFGKTLVFTNTKKSVDYLERVLRGNGWPALGIHGDRTQLQRDMIINKF 451
K T +++ ++ L ++F T L +LR G+ A+ +HG +Q R +NKF
Sbjct: 272 KDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKF 331
Query: 450 KTGKTNILVATDVAARGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQDNKGISHSILTE 271
K+G + LVATDVAARGLD+ V V+NYD P S+ YIHR+GRT R G S +++T+
Sbjct: 332 KSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQ 391
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 94.7 bits (225), Expect = 1e-20
Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 1/155 (0%)
Frame = -2
Query: 660 HVCEQDEKAEKFTEIMHKISGLGFGKTLVFTNTKKSVDYLERVLRGNGWPALGIHGDRTQ 481
H + +EKA K +I + L F + ++F + + L+R+LR +P++ IHG Q
Sbjct: 273 HYVKLEEKA-KNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQ 331
Query: 480 LQRDMIINKFKTGKTNILVATDVAARGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQDN 301
+R FK I VATDV RG+D++ V V+NYD P++ + Y+HR+GR GR
Sbjct: 332 EERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGT 391
Query: 300 KGISHSILTEENARQAKDLIEVLKEAK-QDIPKEL 199
KG++ + + E Q D I+ E ++P E+
Sbjct: 392 KGLAITFSSSEEDSQILDKIQERFEVNITELPDEI 426
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 89.8 bits (213), Expect = 4e-19
Identities = 44/122 (36%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Frame = -2
Query: 501 IHGDRTQLQRDMIINKFKTGKTNILVATDVAARGLDVDGVTHVVNYDYPNTSEDYIHRIG 322
IHG+ Q +R+ + KF+ G+ +L+ATD+ ARG+D GV V+N+D+P + YIHRIG
Sbjct: 318 IHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIG 377
Query: 321 RTGRQDNKGISHSILTEENARQAKDLIEVLKEAKQDIPKELYDLAR-SFDITKSTEKFYK 145
RTGR N G + + T+E+ K + V++ + ++P + L + S ++ K +K
Sbjct: 378 RTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPNWVMALPKPSKEMKKKLKKSPP 437
Query: 144 KK 139
K+
Sbjct: 438 KR 439
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 89.0 bits (211), Expect = 7e-19
Identities = 45/121 (37%), Positives = 67/121 (55%)
Frame = -2
Query: 588 GKTLVFTNTKKSVDYLERVLRGNGWPALGIHGDRTQLQRDMIINKFKTGKTNILVATDVA 409
GKT+VF N + + + L P+ +H Q +R + KFK +LV TDVA
Sbjct: 390 GKTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVA 449
Query: 408 ARGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQDNKGISHSILTEENARQAKDLIEVLK 229
ARG+D+ VTHV++Y P+T++ Y+HR GRT R + G+S + + Q K L LK
Sbjct: 450 ARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILMCGPKELSQLKRLCYRLK 509
Query: 228 E 226
+
Sbjct: 510 K 510
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 85.0 bits (201), Expect = 1e-17
Identities = 42/118 (35%), Positives = 67/118 (56%)
Frame = -2
Query: 579 LVFTNTKKSVDYLERVLRGNGWPALGIHGDRTQLQRDMIINKFKTGKTNILVATDVAARG 400
++F N ++ + + +LR +H + Q +R + +F+ ILVATDVA+RG
Sbjct: 262 IIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRG 321
Query: 399 LDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQDNKGISHSILTEENARQAKDLIEVLKE 226
LD+ V V+N+D P +DYIHR+GRT R G S SI+TE + DL+ +++
Sbjct: 322 LDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDV----DLVHAIED 375
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 85.0 bits (201), Expect = 1e-17
Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 7/182 (3%)
Frame = -2
Query: 717 QVNVGXTELSANRNIQQIVHVCEQDEKAEKFTEIMHKISGLGFGKTLVFTNTKKSVDYLE 538
++ + ELS I+Q+ C+ +E K+ ++ L G++++F K + + +
Sbjct: 313 EIRLKTEELSVE-GIKQLYMDCQSEE--HKYNVLVELYGLLTIGQSIIFCKKKDTAEEIA 369
Query: 537 RVLRGNGWPALGIHGDRTQLQRDMIINKFKTGKTNILVATDVAARGLDVDGVTHVVNYDY 358
R + +G + G+ QRD I++ F+ G + +LV T+V ARG+DV V VVNYD
Sbjct: 370 RRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDM 429
Query: 357 P------NTSEDYIHRIGRTGRQDNKGISHSILTEENARQAKDLI-EVLKEAKQDIPKEL 199
P + Y+HRIGRTGR G+S + + ++ + + + I E + +P +
Sbjct: 430 PLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDD 489
Query: 198 YD 193
Y+
Sbjct: 490 YE 491
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 84.2 bits (199), Expect = 2e-17
Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 8/172 (4%)
Frame = -2
Query: 585 KTLVFTNTKKSVDYLERVLRGN-GWPALGIHGDRTQLQRDMIINKFKTGKTNILVATDVA 409
+ +VF T VD++ VL + P +H T QR I F+ ++ IL ATDV
Sbjct: 294 RIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFATDVV 353
Query: 408 ARGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQDNKGISHSILTEENARQAKDLIEV-L 232
ARG+D +T VV P+ ++DYIHRIGRTGR G ++ IL E+ + + L
Sbjct: 354 ARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLILLEQEKPFLNSIKHLPL 413
Query: 231 KEAK-QDIPKELYDLARSFDITKSTEKFYKKKSFQ-----KPYNFSNNASKR 94
K A + + + RS DI KS+ KF + + + KP+ FS ++ +R
Sbjct: 414 KRATIEPLSDQALSTLRS-DIEKSS-KFSRTNALKTLYGSKPHVFSGSSQRR 463
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 83.8 bits (198), Expect = 3e-17
Identities = 50/161 (31%), Positives = 82/161 (50%)
Frame = -2
Query: 720 VQVNVGXTELSANRNIQQIVHVCEQDEKAEKFTEIMHKISGLGFGKTLVFTNTKKSVDYL 541
V+V V + +A Q+ V V Q E +++ L +T++F +K +
Sbjct: 462 VRVFVDNKKTTAKLLTQEFVRVRPQRELLRP-AMLIYLCKELFHRRTIIFFRSKAFAHKM 520
Query: 540 ERVLRGNGWPALGIHGDRTQLQRDMIINKFKTGKTNILVATDVAARGLDVDGVTHVVNYD 361
+ A IHG +Q QR + F+ GK N L+ATDVA+RG+D+ G+ V+NY+
Sbjct: 521 RVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYE 580
Query: 360 YPNTSEDYIHRIGRTGRQDNKGISHSILTEENARQAKDLIE 238
P T E Y+HR+GRT R G + ++ E + + K + +
Sbjct: 581 APATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFK 621
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 82.2 bits (194), Expect = 8e-17
Identities = 49/151 (32%), Positives = 75/151 (49%)
Frame = -2
Query: 585 KTLVFTNTKKSVDYLERVLRGNGWPALGIHGDRTQLQRDMIINKFKTGKTNILVATDVAA 406
K +VF ++ SV Y+ +L P L +HG + Q +R +F + IL+ T+VAA
Sbjct: 338 KVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAA 397
Query: 405 RGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQDNKGISHSILTEENARQAKDLIEVLKE 226
RGLD+ V +V YD P+ DYIHR+GRT R KG S++ A + LK
Sbjct: 398 RGLDIPAVDWIVQYDPPDDPRDYIHRVGRTAR-GTKGTGKSLMF--LAPSELGFLRYLKT 454
Query: 225 AKQDIPKELYDLARSFDITKSTEKFYKKKSF 133
AK + + + + ++ EK K +
Sbjct: 455 AKVSLNEFEFPANKVANVQSQLEKLVSKNYY 485
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 80.6 bits (190), Expect = 2e-16
Identities = 36/136 (26%), Positives = 71/136 (52%)
Frame = -2
Query: 681 RNIQQIVHVCEQDEKAEKFTEIMHKISGLGFGKTLVFTNTKKSVDYLERVLRGNGWPALG 502
R + Q ++ +K + K+ ++++F N+ V+ L + + G+
Sbjct: 254 RGVTQYYAFVDESQKVHCLNTLFSKLQ---INQSIIFCNSTNRVELLAKKITELGYSCFY 310
Query: 501 IHGDRTQLQRDMIINKFKTGKTNILVATDVAARGLDVDGVTHVVNYDYPNTSEDYIHRIG 322
H Q R+ + + F+ G LV +D+ RG+D+ V V+N+D+P +E Y+HRIG
Sbjct: 311 SHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIG 370
Query: 321 RTGRQDNKGISHSILT 274
R+GR ++G++ S ++
Sbjct: 371 RSGRFGHRGLAISFIS 386
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 80.2 bits (189), Expect = 3e-16
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 5/164 (3%)
Frame = -2
Query: 618 IMHKISGLGFGKTLVFTNTKKSVDYLERVLRGNGWP--ALGIHGDRTQLQRDMIINKFK- 448
++H + + + K +VF ++ SV+Y + P + +HG + Q R KFK
Sbjct: 247 MIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKK 306
Query: 447 TGKTNILVATDVAARGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQDNKGISHSILTEE 268
+ K +L TD+A+RGLD+ V V+ D P + + HR GR GR G++ +L +
Sbjct: 307 SNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLNDG 366
Query: 267 NARQAKDLIEVLKE--AKQDIPKELYDLARSFDITKSTEKFYKK 142
+ ++L+ V K + D P E DL+R +T K K
Sbjct: 367 REEEYEELLRVRKVPITRIDTPIEALDLSRLKVLTHELRKIVSK 410
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 71.7 bits (168), Expect = 1e-13
Identities = 31/83 (37%), Positives = 50/83 (60%)
Frame = -2
Query: 477 QRDMIINKFKTGKTNILVATDVAARGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQDNK 298
+R II++F TG N+LV +D+ ARG+DV +V+NYD P + Y+HRIGRT R +
Sbjct: 475 ERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGRE 534
Query: 297 GISHSILTEENARQAKDLIEVLK 229
G + +++ L++ L+
Sbjct: 535 GFAWTLVQSHEGHHFSKLVKQLR 557
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 68.9 bits (161), Expect = 8e-13
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = -2
Query: 585 KTLVFTNTKKSVDYLERVLRGN--GWPALGIHGDRTQLQRDMIINKFKTGKTNILVATDV 412
KT+VF ++ K V ++ R G L +HG + Q R + KF + + +L TD+
Sbjct: 285 KTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDI 344
Query: 411 AARGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQDNKG 295
ARGLD V V+ D P + YIHR+GRT R + G
Sbjct: 345 VARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSG 383
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 66.9 bits (156), Expect = 3e-12
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Frame = -2
Query: 501 IHGDRTQLQRDMIINKFKTGK---TNILVATDVAARGLDVDGVTHVVNYDYPNTSEDYIH 331
+HG +Q R +N F + + ++IL+ TDVAARGLD+ V VV YD P +++DY+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
Query: 330 RIGRTGRQDNKG 295
RIGRT R + G
Sbjct: 533 RIGRTARAGHNG 544
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 64.1 bits (149), Expect = 2e-11
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Frame = -2
Query: 690 SANRNIQQIVHVCEQDEKAEKFTEIMHKISGL-GFGKTLVFTNTKKSVDYLERVLRGNGW 514
+A NI +H + E +M + G G+ ++F TKK V+Y+ R L +
Sbjct: 1381 TARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDL 1440
Query: 513 PA---LGIH-GDRTQLQRDMIINKFKT--GKTNILVATDVAARGLDVDGVTHVVNYDYPN 352
A + I+ GD + +R M + F+ GKT I++AT G++ GV VV+Y P
Sbjct: 1441 FAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPA 1500
Query: 351 TSEDYIHRIGRTGRQDNKGIS 289
+S DY+ GR GR I+
Sbjct: 1501 SSMDYVQETGRAGRDGKYAIA 1521
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 64.1 bits (149), Expect = 2e-11
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Frame = -2
Query: 690 SANRNIQQIVHVCEQDEKAEKFTEIMHKISGL-GFGKTLVFTNTKKSVDYLERVLRGNGW 514
+A NI +H + E +M + G G+ ++F TKK V+Y+ R L +
Sbjct: 1381 TARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDL 1440
Query: 513 PA---LGIH-GDRTQLQRDMIINKFKT--GKTNILVATDVAARGLDVDGVTHVVNYDYPN 352
A + I+ GD + +R M + F+ GKT I++AT G++ GV VV+Y P
Sbjct: 1441 FAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPA 1500
Query: 351 TSEDYIHRIGRTGRQDNKGIS 289
+S DY+ GR GR I+
Sbjct: 1501 SSMDYVQETGRAGRDGKYAIA 1521
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 50.8 bits (116), Expect = 2e-07
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Frame = -2
Query: 639 KAEKFTEIMHKISGLGFGKT-LVFTNTKKSVDYLERVLRGN-GWPALGIHGDRTQLQRDM 466
K + +TE+ IS ++ +++ ++ S + + LR + G A H +++R
Sbjct: 725 KKDLYTELYRFISNGHLHESGIIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQR 784
Query: 465 IINKFKTGKTNILVATDVAARGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQDNKGISH 286
I N++++G I+VAT G+D V V+++ +P + E Y GR GR D K +H
Sbjct: 785 IQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGR-DGKP-AH 842
Query: 285 SIL 277
I+
Sbjct: 843 CIM 845
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 50.4 bits (115), Expect = 3e-07
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Frame = -2
Query: 486 TQLQRDMIINKFKTGKTNILVATDVAARGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQ 307
+Q ++ + +F+ G+ N L+AT + GLD+ V ++ YD + + R+GRTGR+
Sbjct: 477 SQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGRK 536
Query: 306 DNKGISHSILT--EENAR--QAKDLIEVLKE 226
KG + +LT +E A+ +AKD L++
Sbjct: 537 -RKGYIYMLLTRGKEEAKWERAKDAYRTLQD 566
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 50.0 bits (114), Expect = 4e-07
Identities = 26/72 (36%), Positives = 41/72 (56%)
Frame = -2
Query: 483 QLQRDMIINKFKTGKTNILVATDVAARGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQD 304
Q+Q+ I++F+ G N LVAT + GLD+ ++ YD ++ I R+GRTGR+
Sbjct: 517 QMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGRK- 575
Query: 303 NKGISHSILTEE 268
G +LTE+
Sbjct: 576 KSGKVFVLLTED 587
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 49.2 bits (112), Expect = 7e-07
Identities = 21/48 (43%), Positives = 31/48 (64%)
Frame = -2
Query: 408 ARGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQDNKGISHSILTEEN 265
ARGLD + V V+N+D P+ ++ YIHRIGRT R G + S + ++
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKS 434
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 46.0 bits (104), Expect = 6e-06
Identities = 23/60 (38%), Positives = 34/60 (56%)
Frame = -2
Query: 477 QRDMIINKFKTGKTNILVATDVAARGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQDNK 298
Q+D + +KFKTGK N+L+AT VA G+DV V+ ++ T Y+ GR +K
Sbjct: 412 QKDTL-HKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMASK 470
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 33.1 bits (72), Expect = 0.047
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Frame = -2
Query: 585 KTLVFTNTKKSVDYLERVLRGN------GWPALGIHGDR---TQLQRDMIINKFKTGKTN 433
+T+VF +K+ + L R++R G I R T +R I ++ GK
Sbjct: 553 RTIVFCRVRKTCESLMRLVRQELKTKQKGDLLSKIQSYRAGYTVQERRKIESEMFNGKLY 612
Query: 432 ILVATDVAARGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQDNKGIS 289
++AT+ G+D+ + V+ +P + + + GR GR++ ++
Sbjct: 613 GIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGRRNKSSLA 660
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 31.9 bits (69), Expect = 0.11
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Frame = -2
Query: 705 GXTELSANRNIQQIVHVCEQ-DEKAEKFTEIMHKISGL----GFGKTLVFTNTKKSVDYL 541
G TE +A R +Q I HV + + E+ +EI+ + L G KTL N+ + YL
Sbjct: 138 GKTE-AAKRIMQYITHVSKSVGTEIERVSEIILATNPLLESFGCAKTLRNNNSSRHGKYL 196
Query: 540 ERVLRGNGWPALGIHGDRTQLQRDMIINKFK 448
E + G P +G L+++ I+N+ +
Sbjct: 197 EMIFNSGGVP-VGAKITNYLLEKNRIVNQVR 226
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Frame = +2
Query: 158 SVDFVMSNERA-KSYNSLGI------SCLASFKTSIKSFACLAFSSV 277
S + S +++ KS+NSL +CL +K IK+F C+ +S +
Sbjct: 67 SSSYTNSGQKSFKSFNSLRFIVLKSKTCLLRYKLLIKTFCCITYSKI 113
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = -2
Query: 498 HGDRTQLQRDMIINKFKTGKTNILVATDVAARGLDVDGVTHVVNYDYPNTSEDYIHRIGR 319
+G++ Q I FK KTN+ R + +DG++ + +T+ED I I +
Sbjct: 122 YGNQINQQETFIRFFFKYSKTNL----SYGVRSIALDGLSKCIETSIQSTNEDLIKEIWK 177
Query: 318 TGRQDNKGISHSIL 277
+ + S ++L
Sbjct: 178 CIKSNLNTSSTNVL 191
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -2
Query: 453 FKTGKTNIL-VATDVAARGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQDNKG 295
F T N++ VA RGL + +TH+ + + Y H GR G G
Sbjct: 466 FSTNLNNVVFVANPSEIRGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTG 519
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 27.1 bits (57), Expect = 3.1
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Frame = -2
Query: 594 GFGKTLVFTNTKKSVD------YLERVLRGNGWPALGIHGDRTQLQRDM---IINKFKTG 442
G G LVF ++ +D Y + G+ P L I + L ++ I G
Sbjct: 718 GPGDILVFLTGQEEIDTSCEILYERSKMLGDSIPELVILPVYSALPSEIQSRIFEPAPPG 777
Query: 441 KTNILVATDVAARGLDVDGVTHVVN 367
+++AT++A L +DG+ +VV+
Sbjct: 778 GRKVVIATNIAETSLTIDGIYYVVD 802
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 26.6 bits (56), Expect = 4.1
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 354 NTSEDYIHRIGRTGRQDNKGISHSILTEE-NARQAKDLIEVLKEAKQDIPKELYDLARSF 178
NT E + Q+ K ++ S+ T + N + L E E D ++LYDL
Sbjct: 617 NTKEALDLSVKERSIQEEK-LNESLKTSKTNLEEQTQLAEKYHEELLDNQQKLYDLRIEL 675
Query: 177 DITKSTEK 154
D TKS K
Sbjct: 676 DYTKSNCK 683
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = -2
Query: 243 IEVLKEAKQ----DIPKELYDLARSFDITKSTEKFYKK 142
+EVLKE K+ ++ K+L D R D S +K Y+K
Sbjct: 1019 VEVLKEEKESSSKELAKQLEDAVREKDSALSFKKDYEK 1056
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 221 NRISPKNCMTWLARLTSRNPLK 156
NR S + ++ L+RLTS++PLK
Sbjct: 273 NRCSSTDTLSSLSRLTSQDPLK 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,573
Number of Sequences: 5004
Number of extensions: 62619
Number of successful extensions: 237
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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