Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_B09
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   7.2  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   7.2  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   9.5  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.5  

>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 153  SEQLLLFENRDLNA*KNISIRPYLTHSYINFRIFIS 260
            S  LL+  N D     N+ ++ YL+  Y+ FR ++S
Sbjct: 1157 SIHLLISRNHDPYLMLNLILKHYLSMIYLQFRTYVS 1192


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 487 HKMHQSSLKTLGFRRHDHHQS*LIQHEFGRNHQFVLP 597
           HK +++  +T   RRH HH S   + + GR+ +   P
Sbjct: 13  HKFNETDRETNHSRRHRHHHSRHRESKHGRHDRSERP 49


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 108 SLLSVKLFLYLAAFNQVFDFI 46
           +L+S K+   LA+F+Q+FD +
Sbjct: 275 TLVSEKIIFQLASFHQIFDLV 295


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 622  TTVVNAPSVVIRTDDFDQTHAESIKTDDDRVS*NPTFSAKTDA 494
            TT+ NAPS   +   FD  HA       D +S +P  S  +D+
Sbjct: 1769 TTIRNAPSFRPQMGSFDAEHAVGATFSQDDLS-DPARSVDSDS 1810


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,652
Number of Sequences: 5004
Number of extensions: 57905
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)