Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_B07
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||... 29 0.60
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 28 1.8
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 2.4
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 27 3.2
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 27 3.2
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 27 3.2
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 26 7.4
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 26 7.4
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 26 7.4
>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 29.5 bits (63), Expect = 0.60
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 647 SDQDMNGIASPS---RPAEIMPLSQRTQKPRYSP 739
SD ++ G+ P +PA +PLS+R+ P Y+P
Sbjct: 30 SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 495 YRGPHNCHVSLTTHPAEVDPMYEIIIGG 412
Y+G N + TT+P E P+ E+I GG
Sbjct: 395 YQGYGNASNTTTTNPLEPYPIIELIDGG 422
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 489 GPHNCHVSLTTHPAEVDPMYEIIIGGWENTQSVIRYCRQK 370
GPH+ L +HP + + +I + + + Q V+ YC K
Sbjct: 142 GPHHIQELLDSHPKIIPCVNQIELHPFCSQQKVVDYCESK 181
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 299 HSIKNFLNSLGFMIPGVGIVTLSGFCLQ*RITDCVFSQPPMIISY 433
H I+ L+S +IP V + L FC Q ++ D S+ + +Y
Sbjct: 144 HHIQELLDSHPKIIPCVNQIELHPFCSQQKVVDYCESKGIQLAAY 188
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 161 ISAEPAHSHVECPKLLKILCFLG 93
+ A AH ++ CP L+ LCF+G
Sbjct: 48 VVATEAHDNLGCPHTLEHLCFMG 70
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 776 IRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSYLGLIPNLSQFTTSE 615
+ L + F G V G V +A+ + RVK ++LG P + T SE
Sbjct: 564 VELSISKNIFFIGGGKAVHGLVNLASSRNVSDRVKCMVNFLGTEPLVGLKTASE 617
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = -3
Query: 585 WKIEDGAEFDTPDRLEYKFGPVASGSLEFDY----RGPHNCHVSLTTHPAEVDPMYEII 421
+ I+D A++D PD ++Y SG + Y +G SL+ HP D + +I
Sbjct: 190 FSIDDFAQYDIPDTIDYIL--KTSGQTKLTYIGFSQGTAQAFASLSIHPLLNDKINSLI 246
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +2
Query: 218 TGKGAGSTHSMRTVPDVRSRTNNLPHL-----HSIKNFLNSLGFMIPG 346
TG GAG+ S R+ P +TNN L H + +F + G + PG
Sbjct: 194 TGTGAGTGASHRSSPVTNRQTNNTSALSNSNAHIMSSFEDQYGRLPPG 241
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 7.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -1
Query: 284 CWCVTGRRERSSWSGST 234
CWC+T R + +W T
Sbjct: 39 CWCLTSMRPKCAWRAHT 55
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 349 RDRHLVGFLPAITNHRLCVLPT 414
+++ L FLPA+ NHR VL T
Sbjct: 349 QEQQLQVFLPALANHRKVVLST 370
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 251 RTVPDVRSRTNNLPHLHSIKNFLNSLG-FMIPGVGIVTLSG 370
RT PDV R N P+L S L G ++ VG+ + +G
Sbjct: 383 RTSPDVEYRKNADPYLISGTTILEGNGKLLVTAVGVNSFNG 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,748,751
Number of Sequences: 5004
Number of extensions: 86521
Number of successful extensions: 251
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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