Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_B07
(821 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0313 - 8866182-8866381,8866470-8866638 32 0.63
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 31 1.1
06_01_0172 + 1362101-1363708 31 1.5
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 29 3.4
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 29 3.4
10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359 29 5.9
10_02_0146 - 5837734-5837978,5838005-5838196,5838783-5838936 29 5.9
08_02_0851 - 21866088-21866210,21866311-21866413,21866531-218667... 29 5.9
03_02_0800 + 11337206-11337532,11337634-11337957,11338060-113381... 28 7.8
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 28 7.8
>02_02_0313 - 8866182-8866381,8866470-8866638
Length = 122
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -3
Query: 627 YYVGVCTGW--GATGSWKIEDGAEFDTPDRLEYKFGPVASGSLEFDYRGPHNCHV 469
++VG GW G G W E+G F D L +K+ P+ L+ D+ G C V
Sbjct: 29 WHVGDDKGWTFGVAG-W--ENGKAFKVGDVLVFKYSPMMHNVLQVDHAGYDGCKV 80
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 747 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 637
L G +R WV W +I AG G F+ PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>06_01_0172 + 1362101-1363708
Length = 535
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = -1
Query: 788 RTSPIRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSY--LGLIPNLSQFTTSE 615
R +P +L + P L NI++ G VGI LDA +K+ LG+ P++ +TT
Sbjct: 181 RAAPTKLYI-TPN-LVSCNILLKGLVGIG---DLDAALKVLDEMPGLGITPDVVTYTTVL 235
Query: 614 SAQAGVPQAPGKSKM 570
SA G G K+
Sbjct: 236 SAYCGKGDIEGAQKL 250
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -3
Query: 771 VEIESPGILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDPEP-FPVYYVGVCTGW 601
V++ G+ ++ +W+ G+IS GR W DP+P V YVG+ + W
Sbjct: 88 VDVAGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQYVGL-SSW 146
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -3
Query: 759 SPGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 622
SP +L GG Y G W+R I+ G + P + + D P ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259
>10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359
Length = 514
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 254 SSWSGSTLHPFP*RTSACALDMGPAVNGALRISAEPAHSHV 132
SS G P R C L GPA G LR++++ H+
Sbjct: 22 SSKLGRAFRPINFRRGPCTLPRGPANLGMLRMTSDQQRCHI 62
>10_02_0146 - 5837734-5837978,5838005-5838196,5838783-5838936
Length = 196
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = -2
Query: 268 DVGNGPHGVGRPCTLSR----NALRRAHWIWGPRSMAHYAFRQNRRTATL 131
DVG G VGRPC +R N L A I GP + Y + R A +
Sbjct: 42 DVGPGRFQVGRPCWYNRTAWDNRLSCALGITGPHGIMDYPMQLGRPHAKI 91
>08_02_0851 -
21866088-21866210,21866311-21866413,21866531-21866744,
21866877-21867075,21867171-21868151
Length = 539
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 397 LCVLPTADDYFIHWIYFCGMSCEGNVAVVR 486
LCVLP Y +H I CGM + V++
Sbjct: 226 LCVLPMFHVYSLHSILLCGMRAGAAIVVMK 255
>03_02_0800 +
11337206-11337532,11337634-11337957,11338060-11338194,
11338280-11338519
Length = 341
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 411 WENT-QSVIRYCRQKPDKVTIPTPGIMNP 328
W +T Q I YC+Q PDKV PT + P
Sbjct: 152 WSHTPQYQIGYCQQCPDKVAWPTAELGPP 180
>01_05_0279 +
20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 244 VGRPCTLSRNALRRAHWIWGPRSMAHYAFRQNRRTATLSVQN 119
V R + S N R W++ P S +H+ F +N R++ ++ +
Sbjct: 196 VFRSYSWSANVCGRKLWLFLPPSQSHFVFDRNLRSSVYNIND 237
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,171,609
Number of Sequences: 37544
Number of extensions: 626296
Number of successful extensions: 1890
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1890
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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