Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_B05
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    27   2.3  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   3.1  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    26   7.1  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    25   9.4  

>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 225 LELSSNVRFSNKSVQVQHIHKLDDF*TRAKSENTHL 118
           LEL     F N+ V  Q I KL+D+ T +K  + ++
Sbjct: 671 LELEETTDFKNQEVFKQTIEKLEDYLTNSKQYDANV 706


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 445 LSNNNEL*AGSFSPELCFLLNKI 377
           LS +NE+    FSP +C LLN I
Sbjct: 745 LSGSNEVLPFRFSPTMCILLNNI 767


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 578 KLLFLNNINGNVSSVYEKLLLLSMFRMRKSFLS 480
           +L+  NN+ G  S V EKL  LS  R  KSF S
Sbjct: 101 ELIVCNNVFG--SKVLEKLFPLSTSRQIKSFFS 131


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 550 PFILFKNNSFGCRKLSPEIFISLFNLNHNFSKRK 651
           P I + NNS  C KL+ E+  ++ + +  F+ RK
Sbjct: 173 PVIRYDNNSLLCLKLAEEVSYTIQHESQLFNFRK 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,549
Number of Sequences: 5004
Number of extensions: 54430
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)