Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_B04
         (713 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   3.3  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   3.3  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.9  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.9  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 515 RPKNPLNGSEGQCPARGYIIW 453
           R  +  NG+   CP+R + +W
Sbjct: 336 RMPHKCNGNAHNCPSRSHPVW 356


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 515 RPKNPLNGSEGQCPARGYIIW 453
           R  +  NG+   CP+R + +W
Sbjct: 343 RMPHKCNGNAHNCPSRSHPVW 363


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 231 PLNISEASISKQSEPAKKKTVVPEDKFYS-DESNAPATEGA 112
           P N+ E  ++ +SEP + K  +   +    DE N   T  A
Sbjct: 14  PYNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNA 54


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 231 PLNISEASISKQSEPAKKKTVVPEDKFYS-DESNAPATEGA 112
           P N+ E  ++ +SEP + K  +   +    DE N   T  A
Sbjct: 14  PYNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNA 54


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 231 PLNISEASISKQSEPAKKKTVVPEDKFYS-DESNAPATEGA 112
           P N+ E  ++ +SEP + K  +   +    DE N   T  A
Sbjct: 14  PYNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNA 54


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,692
Number of Sequences: 336
Number of extensions: 3360
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)