Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_B04
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    32   0.071
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    27   3.5  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 32.3 bits (70), Expect = 0.071
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 270 RNTKARQVCIATSPLNISEASISKQSEPAKKKTVVP 163
           +N+K+R V + +SP N+   ++S   +  KKK  VP
Sbjct: 561 KNSKSRNVSVFSSPFNVPSFTVSSSDQVQKKKGNVP 596


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 219 SEASISKQSEPAKKKTVVPEDKFYSDESNAPATEGATVDXG*EKKKMNAD 70
           SE + SKQ+E  +  +V    +  + ES  P + G+T     +K+++ AD
Sbjct: 127 SEPANSKQNEVVEATSVEKAKENVAHESGTPESGGSTSAPKSKKQRLTAD 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,713
Number of Sequences: 5004
Number of extensions: 51759
Number of successful extensions: 147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)