Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_B01
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    26   5.0  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   6.6  

>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 297 YK*NFSGSV*LMSLHYTCCYCGAGHLRTTPRSKYFDLVII 416
           YK + S  +   S H   CY  + H +  P  K  D+ II
Sbjct: 216 YKNSSSSVIPDSSFHSVACYRASSHYKEAPVEKSIDIDII 255


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 431 PF*LTNNYQIKVLTPWCGPQVASPAVTT 348
           P  + + Y+  +L+PW    VASP++ T
Sbjct: 404 PSNIYDEYEQNLLSPWSRSPVASPSIQT 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,448
Number of Sequences: 5004
Number of extensions: 52147
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)