Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_B01
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0690 + 23545198-23545305,23545437-23547246,23547265-235473...    30   2.3  
03_06_0637 - 35219212-35219754,35220405-35220587                       28   6.9  

>06_03_0690 +
           23545198-23545305,23545437-23547246,23547265-23547348,
           23547732-23548048,23549498-23549605,23550038-23550046
          Length = 811

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +1

Query: 271 NDRQNDGRLTSEISLVRFN*CHYTIHVVTAGLATCGPHHGVSTLIW 408
           N R  DG   SEI++  F  CH      T GL   G  HG    +W
Sbjct: 681 NQRSMDGGRDSEIAMGAFQPCHLN----TKGLVARGQIHGFRMSLW 722


>03_06_0637 - 35219212-35219754,35220405-35220587
          Length = 241

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +1

Query: 43  KITLIHFFRADPEDATSLCERISQSDPQTQFNNYSNINRSIKLVHVL*TRIIKNHIL 213
           KI L H      EDATS  ER   S  +T   + +N++++ + V     RII    L
Sbjct: 150 KIDLKHLRSVSLEDATSFAEREGLSFVETSALDATNVDKAFQTVLTEIYRIISKKAL 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,629,448
Number of Sequences: 37544
Number of extensions: 305994
Number of successful extensions: 555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)