Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_A24
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 54 2e-08
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 54 3e-08
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 52 1e-07
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 49 7e-07
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 48 2e-06
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 48 2e-06
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 47 3e-06
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 46 6e-06
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 45 1e-05
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 42 1e-04
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 39 7e-04
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 38 0.002
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 36 0.007
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 35 0.015
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 34 0.020
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 33 0.036
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 33 0.047
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 33 0.047
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 32 0.083
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 32 0.083
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 32 0.11
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 31 0.19
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 31 0.19
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 30 0.33
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 5.4
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 26 5.4
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 7.2
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 26 7.2
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 7.2
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 25 9.5
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 9.5
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 9.5
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|... 25 9.5
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M... 25 9.5
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 54.4 bits (125), Expect = 2e-08
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = -1
Query: 762 CPICLKNL-EXGEK-VKKMPCNHIFHPRCIXTWLDKTNSCPFCRHEMP 625
CPIC ++ E EK KMPC HIF C+ WL+ +CP CR E+P
Sbjct: 107 CPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVP 154
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 53.6 bits (123), Expect = 3e-08
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = -1
Query: 762 CPICLKNLEXGEKVKKMPCNHIFHPRCIXTWL-DKTNSCPFCRHEMP 625
C ICL++ G+KV +PC H FH CI W+ D ++CP C E+P
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCNTEVP 367
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 51.6 bits (118), Expect = 1e-07
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -1
Query: 762 CPICLKNLEXGEKVKKMP-CNHIFHPRCIXTWLDKT-NSCPFCR 637
C +CL N E ++ +++ CNH FH CI WL + NSCP CR
Sbjct: 525 CLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCR 568
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 49.2 bits (112), Expect = 7e-07
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = -1
Query: 786 VIENQKXGCPICLKNLEXGEKVKKMPCNHIFHPRCIXTWLDKTN-SCPFCRHE 631
++E+++ C IC + + ++ +PC H+FH +CI TW+ SCP C +
Sbjct: 197 LLEDEEDFCIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNED 249
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 48.0 bits (109), Expect = 2e-06
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -1
Query: 777 NQKXGCPICLKNLEXGEKVKKMPCNHIFHPRCIXTWLDKTNSCPFCR 637
+++ C IC++ + + V ++PC H FH CI WL +C CR
Sbjct: 391 DEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICR 437
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 47.6 bits (108), Expect = 2e-06
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -1
Query: 759 PICLKNLEXGEKVKKMPCNHIFHPRCIXTWLDKTNSCPFCRHE 631
P + + G ++ K+PC H FH C+ +W N+CP CR E
Sbjct: 39 PASISSTLDGLRIAKIPCGHYFHNHCLESWCRVANTCPLCRTE 81
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 47.2 bits (107), Expect = 3e-06
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -1
Query: 762 CPICLKNLEXGEKVKKMP-CNHIFHPRCIXTWLDK-TNSCPFCR-HEMPTDDE 613
C ICL+ G+ +K+ C H FH CI WL NSCP CR H + T E
Sbjct: 766 CLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRAHGVTTQAE 818
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 46.0 bits (104), Expect = 6e-06
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -1
Query: 762 CPICL-KNLEXGEKVKKMPCNHIFHPRCIXTWLDKTNS-CPFCRHEMPTDDEN 610
C ICL + E +++PC+HIFHP CI +L K + CP C+ + EN
Sbjct: 498 CTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQSVTNMLEN 550
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 44.8 bits (101), Expect = 1e-05
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 720 KKMPCNHIFHPRCIXTWLDKTNSCPFCRHEM 628
K++PC HI H C+ WL++ +CP CR +
Sbjct: 324 KRLPCGHILHFHCLRNWLERQQTCPICRRSV 354
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 41.5 bits (93), Expect = 1e-04
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -1
Query: 711 PCNHIFHPRCIXTWLDKTNSCPFCRHEMP 625
PC+H++H +C+ W++ + CP CR +P
Sbjct: 646 PCHHLYHRQCLLQWMETRSICPVCRCHLP 674
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 39.1 bits (87), Expect = 7e-04
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 762 CPICLKNLEXGEKVKKMPCNHIFHPRCIXTWLDKTNSCPFCRHEMPT 622
CPIC + L+ + C H + C+ WL ++ SCP CR ++ T
Sbjct: 85 CPICTEALQ---RPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYT 128
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 762 CPICLKNLEXGEKVKKMPCNHI-FHPRCIXTWLDKTNSCPFCRHEM 628
C ICL+ + G + + PC H F CI W+D++ +CP C+ +
Sbjct: 21 CVICLQ--KDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPICKRHV 64
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 35.9 bits (79), Expect = 0.007
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 708 CNHIFHPRCIXTWLDKTNSCPFCRHE 631
CNH FH CI WL+ N CP E
Sbjct: 74 CNHAFHFHCISRWLNTRNVCPLDNRE 99
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 34.7 bits (76), Expect = 0.015
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 762 CPICLKNLEXGEKVKKMPCNHIFHPRCIXTWLDKTNSCPFCR 637
C +C++ + + C HIF CI W K + CP CR
Sbjct: 256 CSLCMEFIHCPAATE---CGHIFCWSCINGWTSKKSECPLCR 294
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 34.3 bits (75), Expect = 0.020
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 762 CPICLKNLEXG-EKVKKMPCNHIFHPRCIXTWLDKTNSCPFCRH 634
C +CL+ ++ + + C H FH C+ W +SCP CR+
Sbjct: 208 CVVCLERMDSSITGLITIVCQHTFHCPCLQKW--GNSSCPVCRY 249
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 33.5 bits (73), Expect = 0.036
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = -1
Query: 708 CNHIFHPRCIXTWLDKTNS--CPFCR 637
C H FH C+ W +NS CP CR
Sbjct: 1579 CRHKFHASCLYKWFKSSNSSRCPLCR 1604
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 33.1 bits (72), Expect = 0.047
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -1
Query: 708 CNHIFHPRCIXTWLDKTNSCPFCRHEM 628
C H++ C+ WL ++SCP C+ ++
Sbjct: 1107 CGHLYCSFCLEAWLKHSSSCPMCKTKL 1133
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 33.1 bits (72), Expect = 0.047
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -1
Query: 795 QDVVIENQKXGCPICLKNLEXGEKVKKMPCNHIFHPRCIXTWLD---KTNSCPFCRHEM 628
+ VV +Q+ C+ L+ E + PC HIF CI + L T CP CR ++
Sbjct: 192 KQVVPSSQRLADYKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKV 250
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 32.3 bits (70), Expect = 0.083
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 762 CPICLKNL-EXGEKVKKMPCNHIFHPRCIXTWLDKTNSCPFC 640
CPIC + + E+V + C+H H RC ++ CP C
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTC 312
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 32.3 bits (70), Expect = 0.083
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -1
Query: 798 LQDVVIEN--QKXGCPICLKNLEXGEKVKKMPCNHIFHPRCIXTWLDKTNSCPFCRHEMP 625
++D++ EN ++ C IC L + V PC H F C+ L ++ CP CR +P
Sbjct: 155 MEDLLQENVSRELECQICFGMLY--DPVVS-PCGHTFCGPCLMQALTQSPQCPTCRFGLP 211
Query: 624 T 622
+
Sbjct: 212 S 212
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 31.9 bits (69), Expect = 0.11
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Frame = -1
Query: 801 KLQDVVI----ENQKXGCPICLKNLEXGEKVKKMPCNHIFHPRCIXTWLDKTN---SCPF 643
++Q++V+ E+ C ICL + + + PC+H +H +CI L++++ SC
Sbjct: 175 RMQELVLCGSSESGPPECCICLMPVLPCQALFVAPCSHSYHYKCIRPTLNESHPYFSCFI 234
Query: 642 CR 637
CR
Sbjct: 235 CR 236
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 31.1 bits (67), Expect = 0.19
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Frame = -1
Query: 789 VVIENQKXGCPICLKNLEXGEKVKKM-PCNHIFHPRCIXTW----LDKTNS----CPFCR 637
V ++N+ C +C + + C H+FH CI W +++ N CP+C+
Sbjct: 188 VELKNRLYECSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYCQ 247
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Frame = -1
Query: 708 CNHIFHPRCIXTWLDKTNS---CPFCRHEMPTDD 616
C HIFH CI WL + S CP R D
Sbjct: 52 CKHIFHAHCIQNWLATSGSQGQCPMDRQTFVVAD 85
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 30.3 bits (65), Expect = 0.33
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -1
Query: 762 CPICLKNLEXGEKVKKMP-CNHIFHPRCIXTWLDK-TNSCP 646
C IC + G++V ++ C IFH +C WL CP
Sbjct: 230 CIICFEEFAAGDRVARIEYCLCIFHLKCYRDWLSTGAAGCP 270
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.2 bits (55), Expect = 5.4
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = -2
Query: 578 LNSHKMILMHYTIQCLVSSFIIINFLGLLVISGDINYKRLWLSCLMF----IYNNFLLKH 411
L+SH ++M T L+S I LG +I N + S L+ Y+N+LLK
Sbjct: 1798 LSSHVEVIMRKTFLQLLSE---IKRLGAHIIHASANKILIKTSKLIVQNAVTYSNYLLKS 1854
Query: 410 VHNVKFLSFLILHTVD 363
+ + FL L+ +
Sbjct: 1855 IKTLPLFHFLDLNVTE 1870
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 708 CNHIFHPRCIXTWLDKTNSCPFCR 637
C+H F CI +L + CP CR
Sbjct: 44 CSHTFCSFCIRDYLREHPMCPACR 67
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 579 LVSLLSCRLHNFRHQ*ASHVYKTGMSLS 662
L+SL S +LH H AS V + G+SLS
Sbjct: 427 LISLSSKQLHPRHHNTASIVVQVGVSLS 454
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 461 LWLSCLMFIYNNFLLKHVHNVKFLSFLILHTVD*SSTP 348
+++S ++ + N F LKH ++ K S T+D S P
Sbjct: 450 IFISTVLHVVNIFFLKHQNSKKQKSLASSSTIDLSEQP 487
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -1
Query: 759 PICLKNLEXGEKVKKMPCNHIFHPRCIXTWLDKTNSC 649
P + GE + + + + HPR LDKT+ C
Sbjct: 557 PTTPPSFNVGESLSRRSASPLQHPRTSPDMLDKTSPC 593
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -1
Query: 717 KMPCNHIFHPRCIXTWLDKTNSCPFC 640
K PC + +P C K CPFC
Sbjct: 57 KAPCKAVLNPYCHIDTRAKFWICPFC 82
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -2
Query: 644 FVDMRCLLMTKIMKPTRKQRNELNSHKMILMHYTIQCLVSSF--IIINFLGLLVISGDIN 471
F + CL +T+++ TRK L S K ++F ++I LG+ +N
Sbjct: 297 FSMIACLRLTRLLNITRKTETILKSLKESSTPLVQVVSFNAFFGVMIAILGVQFFKASLN 356
Query: 470 YKRLWL 453
+ +WL
Sbjct: 357 RQCVWL 362
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 283 MRSKYN*CLTLKHKTHHRLAAEMQVVFTSVAHNKAYH 173
+ +KYN LT+ + ++A+ +VV S + AYH
Sbjct: 343 LANKYNHRLTMHPGQYTQIASPREVVVDSAIRDLAYH 379
>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 644 FVDMRCLLMTKIMKPTRKQRNELNSHKMILMHYTIQCL 531
F+D +L I KP++ Q E +H + IQC+
Sbjct: 77 FIDGFSMLFAPISKPSKVQAPETKNHIKSVFAPVIQCV 114
>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = -2
Query: 170 VNVSWWSL*IGII---LRESYCPFSIGFL 93
VN+ W + I + LRE++CP+SIG L
Sbjct: 31 VNLEDWDVFIHTLNEKLREAFCPWSIGNL 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,281,674
Number of Sequences: 5004
Number of extensions: 66340
Number of successful extensions: 170
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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