Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_A22
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    67   1e-12
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    24   9.0  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    24   9.0  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 66.9 bits (156), Expect = 1e-12
 Identities = 35/71 (49%), Positives = 40/71 (56%)
 Frame = -1

Query: 375 AHFHXVLSXXXXXXXXXXXIN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLA 196
           AHFH VLS               P   GL  N  +  IQF+ +FIGVNI F PQHFLGL 
Sbjct: 382 AHFHYVLSMGALFGLCGAYYW-SPKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLGLN 440

Query: 195 GIPRRYSDYPD 163
           G+PRR  DYP+
Sbjct: 441 GMPRRIPDYPE 451


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 307 SFIYRPFIKFLYTKNSIFYNI 245
           S++Y+PFIK  ++ N   + I
Sbjct: 11  SYLYQPFIKAYFSLNMAIFEI 31


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 298 YRPFIKFLYTKNSIFYNIYWSK 233
           +RPF KFL  K  IF + YW +
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQ 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,151,108
Number of Sequences: 5004
Number of extensions: 18995
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)