Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_A20
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    28   1.5  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    27   2.0  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    26   4.6  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    25   8.1  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    25   8.1  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   8.1  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    25   8.1  

>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 278 DILPPT*DGSLVIEIVIFNILTKVFFFGIGNLLLQQKKSKLYNLIGTY-LFKYLFT 442
           D+ PP  D  +  ++ I +  T + FF   ++ L     ++    G Y LF Y+F+
Sbjct: 117 DLAPPEADNQITRDVPISDEKTNILFFPSPSIDLSYVSKEVKQKTGQYSLFAYIFS 172


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 444 RVNKYLNKYVPIKLYSLLFFCCKSKFPIPKKKTLV 340
           R N  L+KY+P+K Y  + FC  S+F +   K  +
Sbjct: 509 RTNDILSKYLPVK-YEHVVFCNLSEFQLSLYKHFI 542


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 627 GSVANSRFGGEMQNSRQLTPTKPV 698
           GSV+NS+  G +  S  L P +PV
Sbjct: 424 GSVSNSQPSGNLSESTNLQPVQPV 447


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 692 FGWSKLSAVLHFATEPGVGNTPSVVXYSDISP 597
           F W+  S V  F    GVGNT +   Y+D  P
Sbjct: 850 FAWANKSKVSSFTVSMGVGNTEAKA-YTDGIP 880


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -3

Query: 221 LLDT*N*VGHFDPSAIATFIYSMC 150
           LLDT N +   D S+IAT IY+MC
Sbjct: 379 LLDT-N-ISPLDASSIATIIYNMC 400


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = +2

Query: 500 TISYNYYYQRNRKFXISXXVRCSVAPFRCLLI 595
           ++ Y  YY R     I   + C++  F C+ +
Sbjct: 247 SLCYQLYYPRTAHVRIHYLIECALGTFGCIFL 278


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 541 PNI*XCEMFCGSVSMSSNIGEMSLXSTTEGVLPTP 645
           P++   E    +  MSSNIG +    T + V PTP
Sbjct: 366 PSVLSMENDFSTKKMSSNIGHVFQNETVKYVFPTP 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,684
Number of Sequences: 5004
Number of extensions: 54662
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)