Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_A18
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.97 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +3

Query: 141 GSASWAVEATTTEAGPVKT--AASKAWPVGATASKTGSVKSATAESRSGLKT 290
           GS   +  AT T  G   T  AAS      AT S   +  +ATA   +G  T
Sbjct: 209 GSTDASTPATVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTTT 260



 Score = 20.6 bits (41), Expect = 9.1
 Identities = 13/48 (27%), Positives = 18/48 (37%)
 Frame = +3

Query: 132 TNRGSASWAVEATTTEAGPVKTAASKAWPVGATASKTGSVKSATAESR 275
           T  G+ +    A+ T  GP   +A  A      A  TG+    T   R
Sbjct: 220 TTTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIPTRRLR 267


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +3

Query: 168 TTTEAGPVKTAASKAWPVGATASKTGSVKSATAESRSGLKTWT----AEGTGLRLS 323
           T  + GP K+ + ++      A +TG++ +  A    G+ + T    A   G+RL+
Sbjct: 455 TPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLA 510


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = -2

Query: 343 PNSVRLMLKR 314
           PNS+R++LKR
Sbjct: 811 PNSLRILLKR 820


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,496
Number of Sequences: 438
Number of extensions: 1570
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)