Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_A17
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0133 - 1057679-1057880,1058112-1058377                           30   2.1  
03_06_0083 - 31532213-31532775,31534016-31534043                       29   4.8  
02_02_0652 - 12651163-12653210,12653327-12653627                       28   8.4  

>03_01_0133 - 1057679-1057880,1058112-1058377
          Length = 155

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 204 CTQ--RLSWPCRSKQPKMRGLEPNQRLPSTLR 293
           CT+  RL WPCR  QP  +GL P  R    L+
Sbjct: 64  CTRGARLGWPCR--QPNTKGLHPWMRASELLK 93


>03_06_0083 - 31532213-31532775,31534016-31534043
          Length = 196

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 398 RALMSGVSSRNR--MAGRGKSGLST*LGWPLKP*PTHSRSPILASSVFPVDPALA 556
           R  +  V +R R  ++G G+ GLS  LG  + P      +P L+SS+   DP LA
Sbjct: 94  RGRVGDVEARRRPEISGDGRRGLSMALGSGVVPRSPMVLTPALSSSLARYDPDLA 148


>02_02_0652 - 12651163-12653210,12653327-12653627
          Length = 782

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 647 FSYNSSPILPAKWPTI*CAGRSSMLSVFLSAPGLD 543
           +    +P++P+KW  +   GR+ +LS F     LD
Sbjct: 554 YDVTGTPVMPSKWIHVVAVGRTWLLSAFALINFLD 588


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,950,294
Number of Sequences: 37544
Number of extensions: 492762
Number of successful extensions: 1306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)