Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_A16
         (376 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954...    28   2.1  
10_08_0005 + 14030414-14030519,14030612-14030921,14031012-140312...    27   4.8  
03_04_0184 - 18210875-18212065                                         26   8.4  
02_01_0395 + 2869748-2870045,2870450-2870571,2871700-2871777,287...    26   8.4  

>05_03_0460 -
           14294931-14295110,14295200-14295234,14295358-14295457,
           14295548-14295669,14296272-14296367,14296489-14298949
          Length = 997

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -1

Query: 373 MNCFSKHASFGARVLIALSSILQAXMDKPXVLARVVKVLGRTGSQGQCTQVKV 215
           M+ F+K  S+G  V +A+ S+L   + +   +AR VK+     S G    V++
Sbjct: 300 MDMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRL 352


>10_08_0005 +
           14030414-14030519,14030612-14030921,14031012-14031233,
           14031326-14031565,14031727-14031804,14031841-14032036,
           14032084-14032265,14032351-14032433,14032526-14032650,
           14032762-14032840,14032924-14033092,14033171-14033231,
           14033312-14033434,14033552-14033749,14033927-14033995,
           14034244-14034320,14034475-14034562
          Length = 801

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -3

Query: 254 PYWFSGPVYSSEGRVHWGDQPS-DHQKR-ERTRP*AETSSLFLNLNVKLGGCD 102
           P W       SEGR H  + PS DH +   +  P A  S +   L + LGG D
Sbjct: 685 PDWCYAVACGSEGRQHASESPSPDHLRLFYQKSPIAHISKVKAPLLMLLGGAD 737


>03_04_0184 - 18210875-18212065
          Length = 396

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 369 IVFRNTPALVHVCLLH*ARYY 307
           +V  N PALVHVCL    ++Y
Sbjct: 133 VVVPNCPALVHVCLQTGRKHY 153


>02_01_0395 +
           2869748-2870045,2870450-2870571,2871700-2871777,
           2871886-2872470,2872917-2873657,2873794-2873868
          Length = 632

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 173 HVSDDLTAGLPNELDLHLSTLAL 241
           HV DD+ A  P+++D H   L L
Sbjct: 108 HVQDDVAASSPDQMDHHTKDLLL 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,455,742
Number of Sequences: 37544
Number of extensions: 165859
Number of successful extensions: 337
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)