Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_A16
         (376 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   3.6  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    20   8.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    20   8.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    20   8.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    20   8.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          20   8.3  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 65  FTCTIYINLCVKLT 24
           FTC I   +C KLT
Sbjct: 636 FTCNIMDAICTKLT 649


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 215 RVHWGDQPSDHQKRERTRP*AETSSL 138
           R  W ++  D  +RER+R     SSL
Sbjct: 60  RETWKERSRDRTERERSREPKIISSL 85


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 215 RVHWGDQPSDHQKRERTRP*AETSSL 138
           R  W ++  D  +RER+R     SSL
Sbjct: 60  RETWKERSRDRTERERSREPKIISSL 85


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 215 RVHWGDQPSDHQKRERTRP*AETSSL 138
           R  W ++  D  +RER+R     SSL
Sbjct: 60  RETWKERSRDRTERERSREPKIISSL 85


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 215 RVHWGDQPSDHQKRERTRP*AETSSL 138
           R  W ++  D  +RER+R     SSL
Sbjct: 60  RETWKERSRDRTERERSREPKIISSL 85


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 202 ETSRQIIRNVKGPVRERRH 146
           ETSR+  R+ +G  R R H
Sbjct: 309 ETSRERSRDRRGRGRSREH 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,713
Number of Sequences: 438
Number of extensions: 1689
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)