Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_A15
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    29   0.14 
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    26   1.3  
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.1  
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ...    24   5.4  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    24   7.1  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    23   9.4  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    23   9.4  

>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 29.5 bits (63), Expect = 0.14
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 130 ITKMFCKRSHLKCNNGRSGRPLK*DRVGT 44
           +   F KR H   N G + RPLK DR  T
Sbjct: 203 VKNSFKKRKHENINRGTNARPLKEDRANT 231


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 59  SLQRSSTPTVVTF*MRSFAKHFCYF 133
           S+ R S P  +T  + + AKH C F
Sbjct: 278 SIVRDSNPMFITLPLSAIAKHICQF 302


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -1

Query: 202 SVVGFPKKIVNDVQGQLRNLKKCKITKMFCKRSHLKCNNGRSGR 71
           S +  P KI      +L N  K      +  RSHL+   GR  +
Sbjct: 169 SFLSLPNKIAVTANLKLSNPTKAYTNHFYILRSHLEWTKGRKAQ 212


>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 430

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 38  VASSDSVSLQRSSTPTVVTF*MRSFAKHFCYFAFFKVSKLPLDI 169
           +A++D ++    +TP+VVTF ++         A  K SK   DI
Sbjct: 349 IATNDVLTESSKNTPSVVTFLIQKLIGQRWKKASLKQSKFSSDI 392


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 72  RPLRPLLHFKCDRLQNIF 125
           +P R  LH   DRL NIF
Sbjct: 104 QPARDFLHTVSDRLDNIF 121


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 31  YYSREFRLGLTSTVVHSDRCYILNAI 108
           +Y R   LG+ ST    D  Y+ N++
Sbjct: 445 FYDRMISLGMPSTFTIEDMKYLANSV 470


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 94  ILNAIVCKTFLLFCIF 141
           ILN IV  +F+ +CIF
Sbjct: 577 ILNFIVRSSFIFYCIF 592


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,158,311
Number of Sequences: 5004
Number of extensions: 21082
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)