Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_A15
         (337 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine rece...    29   1.1  
Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical pr...    26   5.8  
Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical pr...    26   5.8  
AF026205-7|AAD47130.1|  118|Caenorhabditis elegans Hypothetical ...    26   7.7  

>U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 31 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 37  SREFRLGLTSTVVHSDRCYILNAIVCKTFL 126
           S E RL LTS+ +  + C+IL  I+   FL
Sbjct: 9   SEEIRLTLTSSFMMGNHCFILLIIISSVFL 38


>Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical
           protein F28H7.6 protein.
          Length = 525

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 248 ENCLHNFFYSPYLINLRRW 192
           E+CL NF  +P L+ LR W
Sbjct: 142 EDCLFNFTKNPSLVGLRFW 160


>Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 119 VLQTIAFKM*QRSEWTTVEVRPSRNSR 39
           +L+T A +   RS+WTT+  R S  +R
Sbjct: 673 ILRTPALRRQLRSQWTTIRSRASSRTR 699


>Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 119 VLQTIAFKM*QRSEWTTVEVRPSRNSR 39
           +L+T A +   RS+WTT+  R S  +R
Sbjct: 673 ILRTPALRRQLRSQWTTIRSRASSRTR 699


>AF026205-7|AAD47130.1|  118|Caenorhabditis elegans Hypothetical
           protein T23E7.2d protein.
          Length = 118

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 263 NTIYFENCLHNFFYSP-YLINL 201
           NT Y + C+  FFY P YL N+
Sbjct: 14  NTFYVQYCIPYFFYYPFYLYNV 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,474,755
Number of Sequences: 27780
Number of extensions: 121171
Number of successful extensions: 317
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)