Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_A14
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    28   2.0  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    27   4.6  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    27   4.6  

>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 456 VCIDENERCATYRITGGRTSCESARVGTTTLP 361
           +C+D+N R A    +GG     + R+G++ +P
Sbjct: 180 ICVDKNGRIAVVSSSGGLLLKPAGRIGSSPIP 211


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +2

Query: 371 VVPTRADSQEVLPPVIRYVAHLSFSSIQT*LFLTHISFIYNFKKILFIKHSVV 529
           ++PT  D    +    RY+ ++ FS++Q+  +  +    YN+  + F+ HS V
Sbjct: 58  IIPTSVDILVKVAGFQRYIVNVEFSNVQS--YFRY----YNYISLYFVTHSKV 104


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +2

Query: 389 DSQEVLPPVIRYVAHLSFSSIQT*LFLTHIS 481
           D+  VL P I   A + FSSI    F THIS
Sbjct: 553 DTNSVLNPCIPSNAVIEFSSIYLHYFATHIS 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,732,765
Number of Sequences: 5004
Number of extensions: 82012
Number of successful extensions: 158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)