Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_A14
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0741 - 5651773-5651880,5651987-5652055,5652233-5652280,565...    29   6.4  
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936...    28   8.5  

>07_01_0741 -
           5651773-5651880,5651987-5652055,5652233-5652280,
           5652487-5652657,5652746-5652899,5653720-5653797,
           5654165-5654208,5654505-5654604,5655621-5655775
          Length = 308

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 628 KQQDKEQSNLSTHKCLPDVRIGPTTLGAANRGSNHRVLYKK 506
           +  D+E+ +   HKCL D  I  T LGA +R     + Y K
Sbjct: 254 RSYDEEEGDDIDHKCLVDGYITVTPLGALSRAEADVIPYYK 294


>06_01_1133 +
           9364842-9364850,9364929-9365048,9365157-9365476,
           9366267-9366428,9367151-9367235,9367352-9367501,
           9367588-9367635,9367705-9367773,9367897-9368600,
           9369426-9369561,9369636-9369856,9370355-9370486,
           9371316-9371406,9371878-9371925,9372004-9372132,
           9372357-9372626
          Length = 897

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 165 CGCLCRGGSQIFCLTKGSLSKKVC 94
           CGC    G Q  CLT G+  +K C
Sbjct: 651 CGCQSACGKQCPCLTNGTCCEKYC 674


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,123,637
Number of Sequences: 37544
Number of extensions: 522613
Number of successful extensions: 1099
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)