Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_A14
         (870 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-444|AAF54133.1|  278|Drosophila melanogaster CG10296-PA...    30   4.8  
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran...    29   6.3  
AF315785-1|AAK01366.1|  437|Drosophila melanogaster pol polyprot...    29   6.3  

>AE014297-444|AAF54133.1|  278|Drosophila melanogaster CG10296-PA
           protein.
          Length = 278

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 561 GPILTSGKHLCVDRFDCSLSC 623
           G +L   + LC+ RFDC+LSC
Sbjct: 245 GQLLLGLRQLCLRRFDCALSC 265


>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
           transcriptase-like polymeraseprotein.
          Length = 1059

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 130 KYLATTPTQTSTIFYFLLPRCVDEFTAHLVLSGY 231
           K + T+PT+   I  F +PR + E  + L LSGY
Sbjct: 406 KGIETSPTKVQAISDFPIPRTLKELRSFLGLSGY 439


>AF315785-1|AAK01366.1|  437|Drosophila melanogaster pol polyprotein
           protein.
          Length = 437

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 130 KYLATTPTQTSTIFYFLLPRCVDEFTAHLVLSGY 231
           K + T+PT+   I  F +PR + E  + L LSGY
Sbjct: 250 KGIETSPTKVQAISDFPIPRTLKELRSFLGLSGY 283


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,964,716
Number of Sequences: 53049
Number of extensions: 923865
Number of successful extensions: 1923
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1923
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4209111660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)