Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_A12
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    28   1.6  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    27   2.8  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    27   2.8  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   4.9  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    26   6.5  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    26   6.5  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   6.5  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    25   8.6  

>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 494 GPHNCHVSLTTHPAEVDPMYEIIIGGWENTQSVIRYCRQK 375
           GPH+    L +HP  +  + +I +  + + Q V+ YC  K
Sbjct: 142 GPHHIQELLDSHPKIIPCVNQIELHPFCSQQKVVDYCESK 181



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 304 HSIKNFLNSLGFMIPGVGIVTLSGFCLQ*RITDCVFSQPPMIISY 438
           H I+  L+S   +IP V  + L  FC Q ++ D   S+   + +Y
Sbjct: 144 HHIQELLDSHPKIIPCVNQIELHPFCSQQKVVDYCESKGIQLAAY 188


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 166 ISAEPAHSHVECPKLLKILCFLG 98
           + A  AH ++ CP  L+ LCF+G
Sbjct: 48  VVATEAHDNLGCPHTLEHLCFMG 70


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -1

Query: 590 WKIEDGAEFDTPDRLEYKFGPVASGSLEFDY----RGPHNCHVSLTTHPAEVDPMYEII 426
           + I+D A++D PD ++Y      SG  +  Y    +G      SL+ HP   D +  +I
Sbjct: 190 FSIDDFAQYDIPDTIDYIL--KTSGQTKLTYIGFSQGTAQAFASLSIHPLLNDKINSLI 246


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +1

Query: 223 TGKGAGSTHSMRTVPDVRSRTNNLPHL-----HSIKNFLNSLGFMIPG 351
           TG GAG+  S R+ P    +TNN   L     H + +F +  G + PG
Sbjct: 194 TGTGAGTGASHRSSPVTNRQTNNTSALSNSNAHIMSSFEDQYGRLPPG 241


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 500 YRGPHNCHVSLTTHPAEVDPMYEIIIGG 417
           Y+G  N   + TT+P E  P+ E+I GG
Sbjct: 395 YQGYGNASNTTTTNPLEPYPIIELIDGG 422


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 289 CWCVTGRRERSSWSGST 239
           CWC+T  R + +W   T
Sbjct: 39  CWCLTSMRPKCAWRAHT 55


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 354 RDRHLVGFLPAITNHRLCVLPT 419
           +++ L  FLPA+ NHR  VL T
Sbjct: 349 QEQQLQVFLPALANHRKVVLST 370


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 256 RTVPDVRSRTNNLPHLHSIKNFLNSLG-FMIPGVGIVTLSG 375
           RT PDV  R N  P+L S    L   G  ++  VG+ + +G
Sbjct: 383 RTSPDVEYRKNADPYLISGTTILEGNGKLLVTAVGVNSFNG 423


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -1

Query: 647 EPFPVXYVGVCTGWGATGSWKIEDGAEFDTP---DRLEYKFG 531
           E +P+ Y   C     TG+W       F TP   D + +K+G
Sbjct: 393 ESYPIRYRSKCAAVATTGNWLWGFLITFFTPFISDSIGFKYG 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,374,926
Number of Sequences: 5004
Number of extensions: 74809
Number of successful extensions: 203
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)