Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_A12
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0313 - 8866182-8866381,8866470-8866638                           31   0.96 
10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359     29   5.1  
10_02_0146 - 5837734-5837978,5838005-5838196,5838783-5838936           29   5.1  
08_02_0851 - 21866088-21866210,21866311-21866413,21866531-218667...    29   5.1  
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931     29   5.1  
03_02_0800 + 11337206-11337532,11337634-11337957,11338060-113381...    28   6.8  
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    28   6.8  

>02_02_0313 - 8866182-8866381,8866470-8866638
          Length = 122

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 629 YVGVCTGW--GATGSWKIEDGAEFDTPDRLEYKFGPVASGSLEFDYRGPHNCHV 474
           +VG   GW  G  G W  E+G  F   D L +K+ P+    L+ D+ G   C V
Sbjct: 30  HVGDDKGWTFGVAG-W--ENGKAFKVGDVLVFKYSPMMHNVLQVDHAGYDGCKV 80


>10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359
          Length = 514

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 259 SSWSGSTLHPFP*RTSACALDMGPAVNGALRISAEPAHSHV 137
           SS  G    P   R   C L  GPA  G LR++++    H+
Sbjct: 22  SSKLGRAFRPINFRRGPCTLPRGPANLGMLRMTSDQQRCHI 62


>10_02_0146 - 5837734-5837978,5838005-5838196,5838783-5838936
          Length = 196

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -3

Query: 273 DVGNGPHGVGRPCTLSR----NALRRAHWIWGPRSMAHYAFRQNRRTATL 136
           DVG G   VGRPC  +R    N L  A  I GP  +  Y  +  R  A +
Sbjct: 42  DVGPGRFQVGRPCWYNRTAWDNRLSCALGITGPHGIMDYPMQLGRPHAKI 91


>08_02_0851 -
           21866088-21866210,21866311-21866413,21866531-21866744,
           21866877-21867075,21867171-21868151
          Length = 539

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 402 LCVLPTADDYFIHWIYFCGMSCEGNVAVVR 491
           LCVLP    Y +H I  CGM     + V++
Sbjct: 226 LCVLPMFHVYSLHSILLCGMRAGAAIVVMK 255


>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
          Length = 246

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 737 YRGFWVRWDXGIISAGREGEAIPFISWSDPEP 642
           +R  WV W   +I AG  G    F+    PEP
Sbjct: 200 WRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231


>03_02_0800 +
           11337206-11337532,11337634-11337957,11338060-11338194,
           11338280-11338519
          Length = 341

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 416 WENT-QSVIRYCRQKPDKVTIPTPGIMNP 333
           W +T Q  I YC+Q PDKV  PT  +  P
Sbjct: 152 WSHTPQYQIGYCQQCPDKVAWPTAELGPP 180


>01_05_0279 +
           20318440-20318688,20318785-20318931,20319449-20319611,
           20319770-20319887,20320607-20320676,20320774-20320854,
           20320924-20320959,20321129-20321149,20321586-20321642,
           20321716-20321827,20321905-20322178,20322454-20322556,
           20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 249 VGRPCTLSRNALRRAHWIWGPRSMAHYAFRQNRRTATLSVQN 124
           V R  + S N   R  W++ P S +H+ F +N R++  ++ +
Sbjct: 196 VFRSYSWSANVCGRKLWLFLPPSQSHFVFDRNLRSSVYNIND 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,677,497
Number of Sequences: 37544
Number of extensions: 542164
Number of successful extensions: 1560
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1560
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)