Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_A11
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0916 - 28762214-28762414,28763144-28763242,28763573-287639...    28   4.1  
05_05_0227 - 23449579-23450459,23450574-23450691                       27   9.6  
02_05_0030 + 25209067-25209130,25209231-25209400,25210482-252116...    27   9.6  

>03_05_0916 -
           28762214-28762414,28763144-28763242,28763573-28763998,
           28764259-28764501,28764706-28764927,28765392-28765721,
           28767380-28767800,28768292-28768404,28769224-28769367,
           28769439-28769570,28769802-28770013,28770983-28771505
          Length = 1021

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/25 (48%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
 Frame = -1

Query: 492 SSFIIELSKCLSYCNI-VCKEYIDK 421
           SS  IEL K L+YC++ +CKE++++
Sbjct: 547 SSGAIELLKGLNYCDLKICKEFLEE 571


>05_05_0227 - 23449579-23450459,23450574-23450691
          Length = 332

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 356 KRRRWCCYVTCYLKNEILDVMLP 288
           +RRRW   + C   NE+L++ LP
Sbjct: 279 RRRRWTTRIRCGECNEVLELSLP 301


>02_05_0030 +
           25209067-25209130,25209231-25209400,25210482-25211668,
           25211695-25212011,25212669-25213374,25214248-25215448
          Length = 1214

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -2

Query: 347 RWCCYVTCYLKNEILDVMLPYTP-SEGRHL 261
           RWCCY  C    +   V +P  P   GRHL
Sbjct: 212 RWCCYYVCNPATKRF-VEIPTPPDGRGRHL 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,615,974
Number of Sequences: 37544
Number of extensions: 154622
Number of successful extensions: 295
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)