Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_A07
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0222 + 32466379-32466741,32466849-32466948,32467443-324675...    31   0.68 
07_01_0544 + 4012457-4012796,4012897-4013069                           28   3.6  
11_01_0547 + 4314858-4315033,4315898-4316075,4317240-4317419           28   4.8  
03_03_0201 - 15400953-15401080,15401787-15401882,15402252-154024...    27   8.4  

>03_06_0222 +
           32466379-32466741,32466849-32466948,32467443-32467547,
           32467627-32467789,32467995-32468115,32468625-32468705,
           32468813-32468911,32468955-32468986,32468987-32469137,
           32469477-32469563,32470290-32470409,32470514-32470645,
           32470743-32470840,32470919-32471042,32471126-32471233,
           32471822-32471957,32472751-32472861,32472963-32473026,
           32473133-32473205,32473762-32473938,32474012-32474122,
           32474189-32474449,32474811-32474981,32475073-32475228,
           32475590-32475823,32475936-32476103,32476316-32476425,
           32476513-32477041
          Length = 1394

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +3

Query: 117 PSLHSYLRLQQSCCIYPLLTAPPVVK*Y 200
           PSLHS + L+Q+ C Y +L+ PP+++ Y
Sbjct: 476 PSLHSAVLLEQAACCY-VLSKPPMLRKY 502


>07_01_0544 + 4012457-4012796,4012897-4013069
          Length = 170

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 179 AACCKIVCKVLSEATACSCVARRTWHAAMSSSFNITTSLYL 301
           A+CC  + +V+     C CVA     AA+  S N T +L L
Sbjct: 58  ASCCGKLGEVVKSQPECLCVALNADTAALGLSINRTRALGL 98


>11_01_0547 + 4314858-4315033,4315898-4316075,4317240-4317419
          Length = 177

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 280 VKRRTHSSMPRTTRYTRTCRGF 215
           V RR HS+ PRT+R TR  + F
Sbjct: 78  VTRREHSTYPRTSRRTRCLKPF 99


>03_03_0201 -
           15400953-15401080,15401787-15401882,15402252-15402402,
           15404352-15404548,15404660-15404819
          Length = 243

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -3

Query: 339 IKNVNNSRKEMLNRYKEVVMLNEELIAACHVRRATQEHAVASLKTL 202
           +KN+N+  K+ L   + + ML EEL A   ++  T+E+ +  ++ L
Sbjct: 32  VKNMNSLLKKFLFPEESIHMLTEELGAKDPLKAPTRENIMKEMRWL 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,064,680
Number of Sequences: 37544
Number of extensions: 187415
Number of successful extensions: 381
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)