Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_A07
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z83231-5|CAB05753.1|  239|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AL023847-9|CAA19553.1|  239|Caenorhabditis elegans Hypothetical ...    27   5.7  
Z93384-4|CAE17903.1|  308|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AL021492-15|CAE18000.1|  308|Caenorhabditis elegans Hypothetical...    27   10.0 

>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/84 (20%), Positives = 37/84 (44%)
 Frame = -3

Query: 345 NLIKNVNNSRKEMLNRYKEVVMLNEELIAACHVRRATQEHAVASLKTLHTILQQAARLRV 166
           N +     S +E     +++  L +EL+A+  + R   EH +ASL+   + + Q   + V
Sbjct: 546 NALFRARVSEEEYSKSMEKIEELEQELLAS-DLERKNLEHKIASLENCISKVSQLLNVNV 604

Query: 165 GKYSKTVVSASRNAVKENNVEALI 94
           G     +       + + +V  ++
Sbjct: 605 GGVFDAIFDRIEELIAQESVYRVV 628


>Z83231-5|CAB05753.1|  239|Caenorhabditis elegans Hypothetical
           protein Y57A10C.1 protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +1

Query: 235 CSASYVACCYEFFV*HHHLFIPIQHFFPRIINVFY*IRFKGTLII*RLRPNIYPVC 402
           C   Y+ CC    V   HL  PIQ+ FP+   +    +FK +     L    Y  C
Sbjct: 111 CPPVYLLCCISIEV--WHLVSPIQYTFPKTTRLSNLQKFKISAFFFILETYYYYTC 164


>AL023847-9|CAA19553.1|  239|Caenorhabditis elegans Hypothetical
           protein Y57A10C.1 protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +1

Query: 235 CSASYVACCYEFFV*HHHLFIPIQHFFPRIINVFY*IRFKGTLII*RLRPNIYPVC 402
           C   Y+ CC    V   HL  PIQ+ FP+   +    +FK +     L    Y  C
Sbjct: 111 CPPVYLLCCISIEV--WHLVSPIQYTFPKTTRLSNLQKFKISAFFFILETYYYYTC 164


>Z93384-4|CAE17903.1|  308|Caenorhabditis elegans Hypothetical
           protein Y45F10D.15 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +2

Query: 284 TTSLYLFSISFLELLTFFIRFGSRER*L-FDVYVRI-FILFAYNVLT 418
           TT  Y F+++ L L+T+F R  S+ R + F+V  R+   L A+N+ +
Sbjct: 95  TTLQYFFNLAHLLLVTYFARQVSKHRSVSFEVTTRMRRTLVAFNLFS 141


>AL021492-15|CAE18000.1|  308|Caenorhabditis elegans Hypothetical
           protein Y45F10D.15 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +2

Query: 284 TTSLYLFSISFLELLTFFIRFGSRER*L-FDVYVRI-FILFAYNVLT 418
           TT  Y F+++ L L+T+F R  S+ R + F+V  R+   L A+N+ +
Sbjct: 95  TTLQYFFNLAHLLLVTYFARQVSKHRSVSFEVTTRMRRTLVAFNLFS 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,910,040
Number of Sequences: 27780
Number of extensions: 178850
Number of successful extensions: 396
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)