Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_A07
         (497 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.1  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = +2

Query: 275 FNITTSLYLFSISFLELLTFFIRFGSRER*LFDVYV----RIFILFAYNVLTTKKM*IVY 442
           + +   +    ISFL +LTF++   S E+    + +     +F L    ++    + +  
Sbjct: 247 YTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPL 306

Query: 443 LSNILV 460
           L   L+
Sbjct: 307 LGKYLI 312


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = +2

Query: 275 FNITTSLYLFSISFLELLTFFIRFGSRER*LFDVYV----RIFILFAYNVLTTKKM*IVY 442
           + +   +    ISFL +LTF++   S E+    + +     +F L    ++    + +  
Sbjct: 247 YTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPL 306

Query: 443 LSNILV 460
           L   L+
Sbjct: 307 LGKYLI 312


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = +2

Query: 251 WHAAMSSSFNITTSLYLFSIS 313
           ++ A+ + FN+   +YL+++S
Sbjct: 123 YNTAVWARFNVNEQMYLYALS 143



 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 463 MHKYVR*VHNLH 428
           M KYV+ +H+LH
Sbjct: 319 MQKYVQMIHDLH 330


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = +2

Query: 251 WHAAMSSSFNITTSLYLFSIS 313
           ++ A+ + FN+   +YL+++S
Sbjct: 123 YNTAVWARFNVNEQMYLYALS 143



 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 463 MHKYVR*VHNLH 428
           M KYV+ +H+LH
Sbjct: 319 MQKYVQMIHDLH 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,733
Number of Sequences: 438
Number of extensions: 2134
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)