Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_P23
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5039| Best HMM Match : Dirigent (HMM E-Value=9.6)                   30   1.0  
SB_57545| Best HMM Match : zf-C3HC4 (HMM E-Value=0.023)                30   1.0  
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_38805| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_54814| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  

>SB_5039| Best HMM Match : Dirigent (HMM E-Value=9.6)
          Length = 249

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = -1

Query: 254 SPLLFQVIFFKSLFKFTKTDGYGSPASKVLRVQVKLDDRSFTSVLLWDTISVSCKATRP 78
           S +L  ++   S++  T T+GYGSP   V++ +  LD     +V L DT+ +S  +  P
Sbjct: 97  SMMLSAIVRGNSIYD-TVTNGYGSPFFSVVKAKPHLDS-VIGTVSLEDTLDLSITSANP 153


>SB_57545| Best HMM Match : zf-C3HC4 (HMM E-Value=0.023)
          Length = 601

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = -1

Query: 254 SPLLFQVIFFKSLFKFTKTDGYGSPASKVLRVQVKLDDRSFTSVLLWDTISVSCKATRP 78
           S +L  ++   S++  T T+GYGSP   V++ +  LD     +V L DT+ +S  +  P
Sbjct: 449 SMMLSAIVRGNSIYD-TVTNGYGSPFFSVVKAKPHLDS-VIGTVSLEDTLDLSITSANP 505


>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -2

Query: 112 TLYPFLVKQRDRNTNRKGTTK 50
           +L+P++++ R  NTNR+G TK
Sbjct: 149 SLHPWIIRGRHANTNRRGVTK 169


>SB_38805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -1

Query: 254 SPLLFQVIFFKSLFKFTKTDGYGSPASKVLRVQVKLDDRSFTSVLLWDTISVSCKATRP 78
           S +L  ++   S++  T T+GYG+P   V++ +  L D    +V L DT+ +S  +  P
Sbjct: 238 SMMLSAIVRGNSIYD-TVTNGYGAPFFSVVKAKPHL-DLVIGTVSLEDTLDLSITSANP 294


>SB_54814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 42  TXCFVVPLRFVLRSRCFTRNGYSV 113
           T  F  PL FV+   CF R GY +
Sbjct: 429 TAVFATPLIFVMLKICFGRGGYDI 452


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,465,566
Number of Sequences: 59808
Number of extensions: 297709
Number of successful extensions: 577
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)