Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_P23
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.21 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 242 FQVIFFKSLFKFTKTDGYGSPASKVLRVQVKLDDRSFTSV-LLWDTISVSCK 90
           ++V   KS+    + D  G  A KV  VQV  DD  + S   + D++   C+
Sbjct: 128 WEVNILKSIVGQLQVDTQGENAVKVNSVQVPTDDEPYASFKAMEDSVGGKCE 179


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 364 RSLXTYVDGGYTIEEVVDWFRNT 432
           +S+    D   T+ E+ +WF+NT
Sbjct: 515 QSIIESPDKQLTLNEIYNWFQNT 537


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 468 YTLHKKSIWFLTCISEPIYHFFNR 397
           Y L  K I+F+  I    Y+FF R
Sbjct: 214 YNLENKLIYFIEDIGLNTYYFFLR 237


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 455 KNQYGF*HVFLNQSTTSSIVYPP 387
           +N Y F  V    +T + ++YPP
Sbjct: 825 QNPYMFLPVSYMSTTMAGVIYPP 847


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,978
Number of Sequences: 438
Number of extensions: 3001
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)