Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_P22
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   33   0.21 
SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)               30   2.0  
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)               29   3.4  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06)                  29   3.4  
SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)                    29   6.0  
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)                      28   7.9  

>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 26/93 (27%), Positives = 45/93 (48%)
 Frame = +2

Query: 359 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTK 538
           I + G  ++ E +H    S+F  +Y+LP     + V++ +T DG L + A  +E     +
Sbjct: 64  IKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLLHIEALKAE----PQ 118

Query: 539 NTERVVPIVETGAPYKKDEPVEKTTVETLDVST 637
            TE  +    TG+     +  +K    TLDVS+
Sbjct: 119 ETEVSLVGASTGSAGDIAKIDDKRFTVTLDVSS 151


>SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)
          Length = 857

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +1

Query: 604 KDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKRSFCL 783
           KD+ RNLG+  D   E+  S G++   G +  E T      + +    Q  P  ++SF L
Sbjct: 303 KDEDRNLGKNKDERHEEY-SKGNENMDGIKPFELTPEIEAIQSTTTDEQNKPNTEQSFLL 361

Query: 784 SD 789
           S+
Sbjct: 362 SE 363


>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
          Length = 625

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 431 YSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPY 583
           YS+    S       + SD YL+ TA +SE +D +    R V I  TG P+
Sbjct: 171 YSITRGHSVMSEHLNIISDRYLLFTAQVSEGLDFSDINGRAVVI--TGLPF 219


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 565 RDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEER 705
           R WR+V   R C +  S    +  D GA  + +  + C TGT  E R
Sbjct: 343 RVWRTVPPQRVCLEVPSEKARKIPDDGALTVRTEATGC-TGTANEIR 388


>SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06)
          Length = 371

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = -2

Query: 270 ILGPMSTKVGISFHKGANRLNGERFSHGNVNWSSVMETGCAITSLSRAGKAVTVAKPAKA 91
           I+GP+  K G  F     R  G  F     NW  V+ T    T +S A   + V +PA  
Sbjct: 217 IMGPLWFKHGDIFPVARLRFEGFMFDVPR-NWKQVLRTLYGRTGISAAVPTLMVVEPAPT 275

Query: 90  MK 85
            K
Sbjct: 276 QK 277


>SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 688 TRGEERTDHALRTR*SDRKRQRDPTRKRSF 777
           TRG ER++HA +     RK +++ T+  SF
Sbjct: 240 TRGHERSEHAEKAAELKRKEKKEATKHNSF 269


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 434  SLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKT 610
            ++PVN+ A          G  +VT  ++  V +   T  V P+V   A   K EP  +T
Sbjct: 1250 TMPVNTQAVVANMVTQPHGTTIVTPAVANMVTQPHGTTIVTPVVTQSAVATK-EPARRT 1307


>SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)
          Length = 405

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 277 SVDSWPDVHKSGDQLPQRSKQTEWRKVQPWEREL--VICNGDGLRD 146
           +V S+  + KSG  +P R++ T +R   PW +E+  ++C  D L +
Sbjct: 135 AVSSYRFLCKSGHYIPLRTRSTLFR--NPWTKEIEFLVCTNDVLTE 178


>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
          Length = 1035

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 371 GSQEAKEDDHDVFASQFFHTYSLPVNSSAA 460
           G+   +E+D DV+A      Y +P N SAA
Sbjct: 245 GTGVFEEEDDDVYAQDIMSNYDIPKNISAA 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,368,278
Number of Sequences: 59808
Number of extensions: 368160
Number of successful extensions: 1307
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)