Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_P21
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    33   0.066
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    29   1.1  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    27   3.3  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   4.3  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    26   7.6  
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.6  

>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 32.7 bits (71), Expect = 0.066
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +3

Query: 390 FARVIDKKIHLDEYQYQTITELCKLKQENPALKVLISVGGAGEASGFRDMVANHASRKI- 566
           +A    K   +DE +Y+ I +L KLK E+    +  S+  + +A+G  +   + A   + 
Sbjct: 14  YASEFPKSYDIDEIEYERINQLSKLKLEDARADLQSSMEDSNKANGNGEETTDGAEGVLQ 73

Query: 567 FIKSIKTILRNYKLDGIDLDWEFPE 641
             + +   L+ Y LD  D D E  E
Sbjct: 74  TSEEVDDELKVYNLDTYDDDEEEAE 98


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 453 LCKLKQENPALKVLISVGGAGEASGFRDMVANHASRKI 566
           +CK ++ENP + +L +V      SGFRDM     SRK+
Sbjct: 352 VCKHRRENPPISILGTV-----PSGFRDMGVPVISRKL 384


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 246 PDFWNAADHYIPELA 202
           PD WN  DH++P LA
Sbjct: 901 PDSWNYKDHFLPYLA 915


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 581 QNYSKKLQIRWNRFRLGVSRSAQAL*NERKSREATLLPV 697
           QN  +KLQ + N     +SR+   L   RK R+  L+P+
Sbjct: 647 QNEERKLQEKVNEHESLLSRTNDILSTLRKERDEKLIPI 685


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -1

Query: 227 LTTIYQS*HRHVYSSSKDYEKARFRQNSIVI*THRYIRLVATNKL*ILFRCYQ 69
           L T+       +    K YEK   R NS+    H++ R    NKL  L  C +
Sbjct: 712 LKTVVNQLTNELMELKKRYEKLSDRYNSLTPGYHKHKRQEIKNKLIKLIECME 764


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 540 VANHASRKIFIKSIKTILRNYKLDGIDLDWEFPE-VHKLYKMK 665
           +  H  +   I+ +KT L+N  L G+    ++PE  H ++K++
Sbjct: 5   IGTHNIKNSAIQLLKTKLKNEFLKGVKCITKYPENAHSIFKVQ 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,450,893
Number of Sequences: 5004
Number of extensions: 74290
Number of successful extensions: 224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)