Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_P21
(833 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 3e-19
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 89 3e-18
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 6e-16
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 81 1e-15
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 69 6e-12
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32) 61 9e-10
SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05) 32 0.66
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 30 2.7
SB_32102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 93.1 bits (221), Expect = 3e-19
Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 12/181 (6%)
Frame = +3
Query: 327 DGKQLLPASIDPHLCTHINVAFARVIDKKIHLDEYQY---QTITELCKLKQENPALKVLI 497
D + LP IDP LCTHI AFA++ + Y++ + E+ LK +NP+LK L+
Sbjct: 413 DPVKFLPKDIDPLLCTHIVYAFAKIDPATNKIGTYEWNDDRLYKEINDLKLKNPSLKTLL 472
Query: 498 SVGG----AGEASGFRDMVANHASRKIFIKSIKTILRNYKLDGIDLDWEFPEVHKLYKMK 665
+VGG +G S F MVA+ ++R FI S+ + Y DG DLDWE+P
Sbjct: 473 AVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDFDGFDLDWEYPASR---GNS 529
Query: 666 GSRERQHFSQLLREIRMEYLREKRD-----YLLTXXXXXXXXXXXXSYDVQQINNYVXYV 830
+++QHF+ L E+ + R+ D LLT +Y+V ++ + ++
Sbjct: 530 PPQDKQHFTILCEEMLDAFKRKAADTDKPRMLLTAAVSAGHGTVDAAYEVHKLAGILDWI 589
Query: 831 N 833
N
Sbjct: 590 N 590
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 89.4 bits (212), Expect = 3e-18
Identities = 66/197 (33%), Positives = 89/197 (45%), Gaps = 14/197 (7%)
Frame = +3
Query: 285 SNTVVSCYYNTPDN---DGKQLLPASIDPHLCTHINVAFARVIDKKIHLDEYQ---YQTI 446
S V CYY G P IDP LCTHI +FA+V LD Y+ ++
Sbjct: 19 SEYVRGCYYTNWSQYRPKGGTFWPEDIDPFLCTHILFSFAKVNQTTHKLDIYEENDHELY 78
Query: 447 TELCKLKQENPALKVLISVGG---AGEASGFRDMVANHASRKIFIKSIKTILRNYKLDGI 617
+ LK+ NP LK I+VGG + S F MVA R IFIKS LR + DG+
Sbjct: 79 QRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTHGFDGL 138
Query: 618 DLDWEFPEVHKLYKMKGSRERQHFSQLLREIRMEYLRE-----KRDYLLTXXXXXXXXXX 782
DLDWE+P + ++ F+ L RE+R + E K LLT
Sbjct: 139 DLDWEYPGMR---GGSPKSDKGRFTLLCRELREAFEAEAKASGKERMLLTAAVAAGLWTI 195
Query: 783 XXSYDVQQINNYVXYVN 833
+YD+ I + ++N
Sbjct: 196 KGAYDIADIAEPLDWIN 212
Score = 85.8 bits (203), Expect = 4e-17
Identities = 62/197 (31%), Positives = 92/197 (46%), Gaps = 14/197 (7%)
Frame = +3
Query: 285 SNTVVSCYYNTPDN---DGKQLLPASIDPHLCTHINVAFARVIDKKIHLDEYQ---YQTI 446
S V CYY G P IDPHLCTH+ +F++V +++Y+ +
Sbjct: 404 SEYVRVCYYTNWSQYRPKGGTFWPEDIDPHLCTHVIHSFSKVNLTTHVMEKYEKNDFDLY 463
Query: 447 TELCKLKQENPALKVLISVGG---AGEASGFRDMVANHASRKIFIKSIKTILRNYKLDGI 617
+ LK+ NP LK I+VGG + S F MVA R IFIKS LR DG+
Sbjct: 464 KRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFDGL 523
Query: 618 DLDWEFPEVHKLYKMKGSRERQHFSQLLREIRMEYLREKRD-----YLLTXXXXXXXXXX 782
DLDWE+P + ++ F+ L +E+R + E +D LLT
Sbjct: 524 DLDWEYPGMR---GGSPKSDKGRFTLLCQELRDAFEAEAKDSGKERLLLTAAVAAGLWTI 580
Query: 783 XXSYDVQQINNYVXYVN 833
+YD++ I+ + ++N
Sbjct: 581 KDAYDIEGISKPLDWIN 597
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 81.8 bits (193), Expect = 6e-16
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 10/187 (5%)
Frame = +3
Query: 303 CYY-NTPDNDG-KQLLPASIDPHLCTHINVAFARVIDKKIHLDEYQYQTITELCKLK--Q 470
CYY N G + P +IDP LCTHI AFA++ L +++ K+ +
Sbjct: 26 CYYTNWAQYRGLAKYTPDNIDPSLCTHIVYAFAKMNADNSKLAMFEWNDAAMYKKVNDLK 85
Query: 471 ENPALKVLISVGGAGEASG-FRDMVANHASRKIFIKSIKTILRNYKLDGIDLDWEFPEVH 647
+ +K L++VGG SG F+DMV+ + RKIFI LRN+ DG+DLDWE+P
Sbjct: 86 SSSNMKTLLAVGGWNMGSGPFQDMVSTASRRKIFIDDAILFLRNHMFDGLDLDWEYPGA- 144
Query: 648 KLYKMKGSRERQHFSQLLREIRMEYLRE-----KRDYLLTXXXXXXXXXXXXSYDVQQIN 812
+ ++ F+ L +E+ + E K LLT Y++ +
Sbjct: 145 ---RGSPPEDKHRFTLLCQELLAAFETEAANTGKPRLLLTAAVSAGETTVKNGYEISALG 201
Query: 813 NYVXYVN 833
+ ++N
Sbjct: 202 QALDWIN 208
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 80.6 bits (190), Expect = 1e-15
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 9/166 (5%)
Frame = +3
Query: 261 IPVTSDIKSNTVVSCYYN--TPDNDGK-QLLPASIDPHLCTHINVAFARVIDKKIHLDEY 431
+ V + N V CY+ + G+ + P I LCTH+ +FA+ I++K L Y
Sbjct: 9 LAVAACATGNYVRVCYHTNWSQYRQGRAKFWPEDIPADLCTHLMYSFAK-INQKNELAMY 67
Query: 432 QY---QTITELCKLKQENPALKVLISVGGAGEA---SGFRDMVANHASRKIFIKSIKTIL 593
++ + LKQ+NP LK L++VGG S F MV A+RK+FI S+ IL
Sbjct: 68 EWNDDKLYPRFNALKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRIL 127
Query: 594 RNYKLDGIDLDWEFPEVHKLYKMKGSRERQHFSQLLREIRMEYLRE 731
R + DG+DLDWE+P ++Q F+ L +E+ ++ E
Sbjct: 128 RTWGFDGLDLDWEYPATR---GGSPPEDKQRFTVLCQELMNTFIAE 170
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 68.5 bits (160), Expect = 6e-12
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Frame = +3
Query: 450 ELCKLKQENPALKVLISVGGAGEA---SGFRDMVANHASRKIFIKSIKTILRNYKLDGID 620
E LK +NP LK L++VGG S F MV ASRK+FI S +LR + DG D
Sbjct: 189 EFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDGFD 248
Query: 621 LDWEFPEVHKLYKMKGSRERQHF--SQLLREIRMEYLREKRD-YLLTXXXXXXXXXXXXS 791
LDWE+P +++ G ++R +LL ++E + R LLT +
Sbjct: 249 LDWEYPG-NRVGSDPGDKQRFTILCQELLDAFKLEAAQTNRPRLLLTAAVAAGKATIDKA 307
Query: 792 YDVQQINNYVXYVN 833
Y+V +I + +N
Sbjct: 308 YEVDKIGQILDLIN 321
>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
Length = 561
Score = 61.3 bits (142), Expect = 9e-10
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Frame = +3
Query: 483 LKVLISVGGAGEASG-FRDMVANHASRKIFIKSIKTILRNYKLDGIDLDWEFPEVHKLYK 659
+K L++VGG SG F+DMV+ + RKIFI LRN+ DG+DLDWE+P +
Sbjct: 14 MKTLLAVGGWNMGSGPFQDMVSTASRRKIFIDDAILFLRNHMFDGLDLDWEYPGA----R 69
Query: 660 MKGSRERQHFSQLLREIRMEYLRE-----KRDYLLTXXXXXXXXXXXXSYDVQQINNYVX 824
++ F+ L +E+ + E K LLT Y++ + +
Sbjct: 70 GSPPEDKHRFTLLCQELLAAFETEAANTGKPRLLLTAAVSAGETTVKNGYEISALGQALD 129
Query: 825 YVN 833
++N
Sbjct: 130 WIN 132
>SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05)
Length = 798
Score = 31.9 bits (69), Expect = 0.66
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 486 KVLISVGGAGEASGFRDMVANHASRKIFIKSIKTILRNYKLDGIDLDWEFPEVHKL 653
KV ++ + RDM +H +K S+ T+ + GID DW F E+ KL
Sbjct: 503 KVANAIDDNSKNQAVRDMFVSHEGKKTLEVSVPTL----SIYGIDYDWFFGEMSKL 554
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 219 SGQLHSKSQDNVFFIPVTSDIKSNTVVSCYYNTPDNDGKQLLPASIDPHLCTHINVAFAR 398
S LH + + + T + S VVS PDND + + P LCT + ++F
Sbjct: 453 SKSLHGRWFAGLKYNQTTPTLVSFRVVS---RNPDNDPRPF-DIGVPPRLCTFLQLSFGN 508
Query: 399 VID 407
V+D
Sbjct: 509 VLD 511
>SB_32102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 343 CQPVLTLTCAHTSMLHLQESSTKRYI*MNINTKL*LNCANSNR--KILPLKY*FQWEV 510
C+PVL+L T + ++ TK Y +I+ + NC ++ K+ Y F +E+
Sbjct: 93 CEPVLSLLLTTTKLSQIRVRETKNYFSASIDKNIYPNCFKLSQYTKVTHTYYQFNFEL 150
>SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +3
Query: 165 LFIVLGTAVYMSMLTLVYSGQLHSKSQDNVFFIPVTSDIKSNTVVSCYYNTPDNDGKQ 338
LF++ AV + +LTLV LH +SQ+ V I V S T +S + +T N +Q
Sbjct: 778 LFLIFPFAVLVCLLTLVAENALH-RSQNRVRVINVQS-----TTMSDFRDTKANQSEQ 829
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,173,973
Number of Sequences: 59808
Number of extensions: 528085
Number of successful extensions: 1163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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