Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_P21
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    27   0.28 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              24   1.5  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    24   1.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.1  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 277 TSKVIQ*CLVITTHLIMMANNYCQPVLTLTCAHTSMLHLQESSTKRYI*MNINTKL*LNC 456
           T+ ++   +++  H  M +  Y    + L       L L+ SST+R I  N+N  L L C
Sbjct: 229 TTDLLSYNILLRRHYSMNSTTYVTLTIVLMTMTLMTLWLEPSSTERMIIANLNFILHLFC 288


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 710 QNGIFEGKARLPADCXC 760
           +NG+ E K R P +C C
Sbjct: 121 ENGVMEIKIREPVECKC 137


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 710 QNGIFEGKARLPADCXC 760
           +NG+ E K R P +C C
Sbjct: 121 ENGVMEIKIREPVECKC 137


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = -1

Query: 833 VNIVYIIINLLHIVGNINYCL 771
           + ++Y +I +  +VGN++ C+
Sbjct: 56  ITVIYAVIFVTGLVGNVSTCV 76


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 833 VNIVYIIINLLHIVGNINYC 774
           + I+Y+II +  I GNI  C
Sbjct: 43  LTIIYMIIFVTGIFGNITTC 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,071
Number of Sequences: 438
Number of extensions: 5324
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)