Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_P19
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 221 1e-58
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 120 2e-28
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 32 0.11
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.4
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 27 2.4
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 27 4.3
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 25 9.8
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 25 9.8
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 25 9.8
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 9.8
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 25 9.8
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 221 bits (539), Expect = 1e-58
Identities = 111/228 (48%), Positives = 152/228 (66%), Gaps = 5/228 (2%)
Frame = +3
Query: 153 VAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNL 332
VAA K SK+EE++ P++Y++ RS + L+ K+ +PYPHKF V+I+L EFI KY+ L
Sbjct: 57 VAAPKSSSKKEEDLDPSQYFENRSRTIMELRQ-TKDPNPYPHKFQVTITLPEFIAKYEGL 115
Query: 333 NNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTDK 512
G+ V ++VAGRV +R +G KL FY++ A+G K+QVM A+ +T D F +
Sbjct: 116 ARGETKPEVEVAVAGRVLGLRTAGNKLRFYEIHADGKKLQVMCQAQDADTVD-FAAQHEH 174
Query: 513 LRRGDIIGCVGHPGKTKK-----GELSIIPKNIKLLAPCLHMLPHLHFGLKDKETRFRKR 677
LRRGDIIG G+PG++ GELSI + LL+PCL MLP H+GLKD E R R+R
Sbjct: 175 LRRGDIIGIRGYPGRSNPKGRADGELSIFARQCVLLSPCLRMLPKEHYGLKDLEIRHRQR 234
Query: 678 YLDLILNDKVRQIFYTRAKIIAYVRRFLDNMGFLXVETPLMNMVPGGA 821
YLDLI+N R F R++II Y+R F D+ F+ VETP+MNM+ GGA
Sbjct: 235 YLDLIMNRSTRDRFVMRSRIIQYIRHFFDSRDFMEVETPMMNMIAGGA 282
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 120 bits (290), Expect = 2e-28
Identities = 70/175 (40%), Positives = 102/175 (58%), Gaps = 5/175 (2%)
Frame = +3
Query: 312 IEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETED- 488
IEK++N + V +V GR+ SIR SG+KL F+D+ K+QV+ N K TE+
Sbjct: 67 IEKWRNKITKSEIAMVRYTVCGRISSIRYSGSKLAFFDVLYGNKKLQVVFNKKNIGTEEE 126
Query: 489 ---KFFKDTDKLRRGDIIGCVGHPGKTKKGELSIIPKNI-KLLAPCLHMLPHLHFGLKDK 656
KF L++GD I C G+ G++ GELSI + KLL+PCLH +P L +
Sbjct: 127 MKGKFIPRLKALQKGDCIQCSGNVGRSGSGELSIYATELPKLLSPCLHPIP---VKLTNY 183
Query: 657 ETRFRKRYLDLILNDKVRQIFYTRAKIIAYVRRFLDNMGFLXVETPLMNMVPGGA 821
E RF KR++D++ N K ++ R +II +R+F GFL VETP+++ GGA
Sbjct: 184 EKRFEKRFVDMMSNTKSLELLEKRYRIIESIRKFFSERGFLEVETPILSHHFGGA 238
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 31.9 bits (69), Expect = 0.11
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +1
Query: 472 YMKQKISFLKILINYAEVISLVVWAIQVKLRKENFLLSRKI*NCLHHAFICCRIYISVSK 651
Y ++ + L++Y E S + A++V R+ F L+ K C+ A +C + +SK
Sbjct: 494 YYSFRMLIYRPLLHYLEADSPAMQALKVPDRQTAFTLACK---CVDSAIVCVQNLSHLSK 550
Query: 652 TKKPALEKGIWT 687
K L++ WT
Sbjct: 551 GLKRTLDRYYWT 562
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Frame = +3
Query: 147 PVVAAEKKPSKQEEE------ISPNEYYKLRSGAVAALKNGLKE 260
P A+ KPS+ EE + PN++ R+G VAAL++ L++
Sbjct: 453 PTEASSTKPSEAAEESTPRFSVRPNKFTGSRAGFVAALESRLQK 496
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 27.5 bits (58), Expect = 2.4
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = +3
Query: 156 AAEKKPS-KQEEEISP-NEYYKLRSGAVAALKNGLK---EDHPYPHKFNVSISLEEFIEK 320
A K+P+ K ++ S ++Y L SG + + + E PY + V+ S+ +
Sbjct: 448 AKNKQPATKLVQQASDFDQYVSLYSGYLQGFSDNFRPYVELLPYKNSRMVTHSIRFLEQS 507
Query: 321 YQNLNNGDVLENVTLSV 371
Y N++NG V N T V
Sbjct: 508 YTNVSNGLVFVNTTTDV 524
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 26.6 bits (56), Expect = 4.3
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +3
Query: 291 SISLEEFIEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAK 470
S L+E + KY++ N + ++ + I+ + + L + EG I+V+ +
Sbjct: 233 SYFLQESLHKYESTKNKIAYLSFGSNIGDKFEQIQTALSMLH----KIEG--IRVLDVSP 286
Query: 471 LYETEDKFFKDTDKLRRG 524
LYETE ++KD G
Sbjct: 287 LYETEPMYYKDQPSFLNG 304
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 572 TFYYPEKYKIACTM--PSYVAAFTFRSQRQRN 661
+++ EK KIACT+ P F FRS + N
Sbjct: 52 SYFESEKIKIACTVSGPRPSKTFAFRSSAKLN 83
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.4 bits (53), Expect = 9.8
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -3
Query: 57 NFLPWLSDLIHLT 19
+F+PWL+D+ HLT
Sbjct: 6 HFVPWLTDIRHLT 18
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 246 NGLKEDHPYPHKFNVSISLEEFIEKYQNLNN 338
NGL ++ P VS + E I+ Y+NLN+
Sbjct: 228 NGLSDNKSVPRVLVVSPTRELAIQTYENLNS 258
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 330 LNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKD 503
L NGD + VTLS + + S+ + G+ F + + A ++ + + ++ D F D
Sbjct: 536 LRNGDASKQVTLSESPKGDSLLDGGSLSYFTNNISSVAGLETPSKLPMSKSFDTFEDD 593
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 582 IPKNIKLLAPCLHMLPHLHFGLKDKETRFRKRYLDLILNDKVRQIF 719
+ + I LA +H+L H + LK E RK+ DL + +IF
Sbjct: 276 LSERILRLAIKVHVLRHRGYALKPNEEELRKKLDDLTKSLNNPEIF 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,973
Number of Sequences: 5004
Number of extensions: 62095
Number of successful extensions: 180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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