Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_P19
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673...   216   2e-56
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677...   132   3e-31
06_01_0228 - 1736373-1736721,1739915-1740120,1740513-1740844,174...    29   4.5  
11_06_0690 + 26303733-26306540                                         29   5.9  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     29   5.9  

>03_05_0168 -
           21466431-21466445,21467053-21467160,21467222-21467365,
           21467778-21467846,21467928-21468071,21468409-21468565,
           21468671-21468767,21469015-21469297,21469382-21469507,
           21470098-21470178,21471990-21472072,21472393-21472478,
           21473329-21473422,21473516-21473681,21473777-21473851,
           21474082-21474157,21474259-21474347
          Length = 630

 Score =  216 bits (527), Expect = 2e-56
 Identities = 110/241 (45%), Positives = 164/241 (68%), Gaps = 22/241 (9%)
 Frame = +3

Query: 165 KKPSKQEEEISPNEYYKLRSGAVAALK-NGLKEDHPYPHKFNVSISLEEFIEKYQNLNNG 341
           K+ +  +EE+ P +YY+ R  A+ +LK  G+   +PYPHKF  +I++ ++IEKY+++N G
Sbjct: 68  KESAADDEEMDPTQYYENRLKALDSLKATGV---NPYPHKFLANITVADYIEKYKSMNVG 124

Query: 342 DVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETED-KFFKDTDKLR 518
           D L +VT  +AGR+ + R   +KL+FYDL   G K+QV A+A+  E ED +F K    L+
Sbjct: 125 DKLVDVTECLAGRIMTKRAQSSKLLFYDLYGGGEKVQVFADARTSELEDNEFIKFHSTLK 184

Query: 519 RGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHL--------------------H 638
           RGDI+G  G+PGK+K+GELSI PK I +L+PCLHM+P                       
Sbjct: 185 RGDIVGVCGYPGKSKRGELSIFPKKIVVLSPCLHMMPRQKSEGSAVPTPWAPGMGRNIEK 244

Query: 639 FGLKDKETRFRKRYLDLILNDKVRQIFYTRAKIIAYVRRFLDNMGFLXVETPLMNMVPGG 818
           + L+D+ETR+R+RYLDL++N +VR IF TR+K+++++R+FLD + FL VETP+MNM+ GG
Sbjct: 245 YVLRDQETRYRQRYLDLMVNHEVRHIFKTRSKVVSFIRKFLDGLDFLEVETPMMNMIAGG 304

Query: 819 A 821
           A
Sbjct: 305 A 305


>02_05_0003 -
           24867053-24867145,24867264-24867437,24867673-24867735,
           24868108-24868198,24869579-24869673,24870471-24870668,
           24871475-24871648,24872335-24872439,24872645-24872737,
           24873688-24873690,24874776-24874844,24875208-24875265,
           24875810-24875918,24876603-24876714,24877992-24878204,
           24878214-24878546
          Length = 660

 Score =  132 bits (319), Expect = 3e-31
 Identities = 70/183 (38%), Positives = 115/183 (62%)
 Frame = +3

Query: 267 PYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAK 446
           PY +K++ + + +E  + Y +L NG+V  +V +S+AGR+ + R  G KL+F  +R +   
Sbjct: 122 PYAYKWDRTHTTKELQDGYTHLENGEVCADVAVSIAGRIVARRAFG-KLVFMTVRDDSGT 180

Query: 447 IQVMANAKLYETEDKFFKDTDKLRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHML 626
           IQ+    K   TE++F +    +  GDIIG  G   KT+KGELS+  KN ++L   L  L
Sbjct: 181 IQLYCE-KDSLTEEQFEQLKTIIDIGDIIGANGSIKKTEKGELSVYVKNFEILTKSLLPL 239

Query: 627 PHLHFGLKDKETRFRKRYLDLILNDKVRQIFYTRAKIIAYVRRFLDNMGFLXVETPLMNM 806
           P  + GL D + R+R+RY+D+I N +V  +F TRAK ++ +R+ +++ GF+ VETP++ +
Sbjct: 240 PDKYHGLTDVDKRYRQRYVDMIANPEVADVFRTRAKAVSEIRKTMESFGFIEVETPVLQV 299

Query: 807 VPG 815
           V G
Sbjct: 300 VGG 302


>06_01_0228 -
           1736373-1736721,1739915-1740120,1740513-1740844,
           1740935-1741499
          Length = 483

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 626 QHMKAWCKQFYIFRDNRKFSFLSFTWMAHTTN 531
           +H + W + F +F  NR  +FL   +M HT N
Sbjct: 352 RHHRTWDRLFRLFTRNRMRTFLIEAFMCHTHN 383


>11_06_0690 + 26303733-26306540
          Length = 935

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +3

Query: 177  KQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLEN 356
            +Q +++ P  Y   RS  +AA KNG K  H       V +    FIE     + GDVL  
Sbjct: 847  RQRQQVVP--YSPRRSNRLAA-KNGGKHIHSSTKAQRVVMKKLGFIEDENKADEGDVLRY 903

Query: 357  VTL 365
            V L
Sbjct: 904  VEL 906


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = +3

Query: 342  DVLENVTLSVAGRVHSIRES--GAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTDKL 515
            D LE+  + V   VH    S    ++   DLR E   I     AKL E  +   K+ DK+
Sbjct: 3036 DYLESDCMIVPSDVHYELSSPRNVEVEAVDLRDETFYIGETKAAKLEEKNETNTKEDDKM 3095

Query: 516  RRGDIIGCVGHPGKTKKGELSIIPKNIKL 602
               ++   V +  KT   EL    KN+ L
Sbjct: 3096 VLVEVESPVKNEDKTDLVELESFVKNVSL 3124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,609,605
Number of Sequences: 37544
Number of extensions: 363355
Number of successful extensions: 806
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)