Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_P19
         (821 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)             140   1e-33
SB_54522| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_797| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.0  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   29   3.4  
SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19)        29   4.6  
SB_14134| Best HMM Match : Hormone_3 (HMM E-Value=2.3)                 29   4.6  
SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  

>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1449

 Score =  140 bits (339), Expect = 1e-33
 Identities = 86/181 (47%), Positives = 108/181 (59%), Gaps = 23/181 (12%)
 Frame = +3

Query: 348  LENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTDKLRRGD 527
            L + +L    R+H+ R SG+KL+FYDLR EG+K+QVMA+A+   +E  F    DK+RRGD
Sbjct: 594  LTSCSLQDQRRIHAKRASGSKLLFYDLRGEGSKLQVMADARA--SEQDFNAVHDKIRRGD 651

Query: 528  IIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHLHFGLKDKETRFRKRY------LDL 689
            IIG  G PGKTKKGELSI+P ++ LLAPCLHMLPHLHFGLKDK TRF   +      L L
Sbjct: 652  IIGVKGKPGKTKKGELSILPSSVTLLAPCLHMLPHLHFGLKDK-TRFVMPFSLTALSLGL 710

Query: 690  ILNDKVRQIFYTRAKIIA--------------YVRRFLDNMGFL---XVETPLMNMVPGG 818
                K R +      ++               +   F+     L    VETPLMNM+PGG
Sbjct: 711  PCYPKTRFVLAIVTIVLTLGPLAIKDKVCDAIFTNGFVSGSPMLPKDKVETPLMNMIPGG 770

Query: 819  A 821
            A
Sbjct: 771  A 771



 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 37/74 (50%), Positives = 50/74 (67%)
 Frame = +3

Query: 138 SQQPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIE 317
           ++ P    EKK    EE + PN+Y+K+RS AV ALK    ++ PYPHKF+VSISL +FI+
Sbjct: 52  AKNPGQGEEKKKEIDEESLDPNQYFKIRSLAVEALKK--TDEPPYPHKFHVSISLNDFIQ 109

Query: 318 KYQNLNNGDVLENV 359
           KYQ+  NG   E+V
Sbjct: 110 KYQDTENGTWSEDV 123


>SB_54522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 783 VETPLMNMVPGGA 821
           VETPLMNM+PGGA
Sbjct: 1   VETPLMNMIPGGA 13


>SB_797| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +3

Query: 696 NDKVRQIFYTRAKIIAYVRRFLDNMGFLXVETPLMNM 806
           ND V  I+   +K I  ++ FLDN GF+  E PL+N+
Sbjct: 255 NDYVSSIYGCSSKRI--LQAFLDNSGFICKEEPLVNL 289


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 28/92 (30%), Positives = 42/92 (45%)
 Frame = +3

Query: 186  EEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLENVTL 365
            EEIS N    +    V  + NG KED   P K + + S +      + L NGD++++   
Sbjct: 1360 EEISENGNDLISVTKVEKV-NGFKEDCNGPEKIDTNQSDDTTPVDTKPLTNGDIVDDTGP 1418

Query: 366  SVAGRVHSIRESGAKLIFYDLRAEGAKIQVMA 461
             +A   HS + +    I   L+ E   IQV A
Sbjct: 1419 ELARMDHS-KPTNFPAIPSHLKLELTSIQVPA 1449


>SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19)
          Length = 613

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 243 KNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVA 374
           +NG++ ++    K  +++S +E+IEK Q   NG +   V+L  A
Sbjct: 349 ENGIENENK---KRKINLSYQEWIEKVQKKRNGGITRKVSLKQA 389


>SB_14134| Best HMM Match : Hormone_3 (HMM E-Value=2.3)
          Length = 683

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 147 PVVAAEKKPSKQEEEISPNEYYKLRSGAVAAL 242
           P++ A+ +P K  E+++ +EYY L  G V  L
Sbjct: 33  PLIPAKARPQKGTEKLNGDEYYSLFVGGVHRL 64


>SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 528 IIGCV--GHPGKTKKGELSIIPKNIKLLAP 611
           I+GCV  G PGKT+    S IP  +KL  P
Sbjct: 24  IVGCVKMGVPGKTEGTMFSQIPCEVKLTGP 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,545,714
Number of Sequences: 59808
Number of extensions: 413238
Number of successful extensions: 867
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)