Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_P19
(821 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna ... 251 5e-67
U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna ... 251 5e-67
U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna ... 243 1e-64
Z22176-7|CAA80137.1| 910|Caenorhabditis elegans Hypothetical pr... 29 5.3
AF078781-1|AAC26915.2| 258|Caenorhabditis elegans Hypothetical ... 29 5.3
AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily a... 28 7.0
>U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform b protein.
Length = 596
Score = 251 bits (614), Expect = 5e-67
Identities = 120/223 (53%), Positives = 156/223 (69%)
Frame = +3
Query: 153 VAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNL 332
VA K ++ + P EY+ +R + A + D+P+PHKFNV+ISL +FI KY L
Sbjct: 62 VADAPKVVREADPSDPQEYFNMRVRMIEARRAA--GDNPFPHKFNVTISLTDFITKYTPL 119
Query: 333 NNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTDK 512
V+E + +SVAGR+HS RESG+KL+FYD+ EG IQ+MANAK + + F D+
Sbjct: 120 EKEQVVEEI-VSVAGRIHSKRESGSKLVFYDIHGEGTHIQIMANAKFHTGDVDFVTLHDR 178
Query: 513 LRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHLHFGLKDKETRFRKRYLDLI 692
++RGDI+G G +TK GELS+IP I L PCLHMLPH HFGLKDKE RFRKRYLDLI
Sbjct: 179 IKRGDIVGFTGRATRTKAGELSLIPNEILQLTPCLHMLPHSHFGLKDKELRFRKRYLDLI 238
Query: 693 LNDKVRQIFYTRAKIIAYVRRFLDNMGFLXVETPLMNMVPGGA 821
LN +V+ F R+KII ++RR+LDN+GFL VETP+MN + GGA
Sbjct: 239 LNPRVKDNFVIRSKIITFLRRYLDNLGFLEVETPIMNQIAGGA 281
>U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform a protein.
Length = 572
Score = 251 bits (614), Expect = 5e-67
Identities = 120/223 (53%), Positives = 156/223 (69%)
Frame = +3
Query: 153 VAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNL 332
VA K ++ + P EY+ +R + A + D+P+PHKFNV+ISL +FI KY L
Sbjct: 38 VADAPKVVREADPSDPQEYFNMRVRMIEARRAA--GDNPFPHKFNVTISLTDFITKYTPL 95
Query: 333 NNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTDK 512
V+E + +SVAGR+HS RESG+KL+FYD+ EG IQ+MANAK + + F D+
Sbjct: 96 EKEQVVEEI-VSVAGRIHSKRESGSKLVFYDIHGEGTHIQIMANAKFHTGDVDFVTLHDR 154
Query: 513 LRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHLHFGLKDKETRFRKRYLDLI 692
++RGDI+G G +TK GELS+IP I L PCLHMLPH HFGLKDKE RFRKRYLDLI
Sbjct: 155 IKRGDIVGFTGRATRTKAGELSLIPNEILQLTPCLHMLPHSHFGLKDKELRFRKRYLDLI 214
Query: 693 LNDKVRQIFYTRAKIIAYVRRFLDNMGFLXVETPLMNMVPGGA 821
LN +V+ F R+KII ++RR+LDN+GFL VETP+MN + GGA
Sbjct: 215 LNPRVKDNFVIRSKIITFLRRYLDNLGFLEVETPIMNQIAGGA 257
>U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform c protein.
Length = 514
Score = 243 bits (594), Expect = 1e-64
Identities = 112/187 (59%), Positives = 141/187 (75%)
Frame = +3
Query: 261 DHPYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEG 440
D+P+PHKFNV+ISL +FI KY L V+E + +SVAGR+HS RESG+KL+FYD+ EG
Sbjct: 14 DNPFPHKFNVTISLTDFITKYTPLEKEQVVEEI-VSVAGRIHSKRESGSKLVFYDIHGEG 72
Query: 441 AKIQVMANAKLYETEDKFFKDTDKLRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLH 620
IQ+MANAK + + F D+++RGDI+G G +TK GELS+IP I L PCLH
Sbjct: 73 THIQIMANAKFHTGDVDFVTLHDRIKRGDIVGFTGRATRTKAGELSLIPNEILQLTPCLH 132
Query: 621 MLPHLHFGLKDKETRFRKRYLDLILNDKVRQIFYTRAKIIAYVRRFLDNMGFLXVETPLM 800
MLPH HFGLKDKE RFRKRYLDLILN +V+ F R+KII ++RR+LDN+GFL VETP+M
Sbjct: 133 MLPHSHFGLKDKELRFRKRYLDLILNPRVKDNFVIRSKIITFLRRYLDNLGFLEVETPIM 192
Query: 801 NMVPGGA 821
N + GGA
Sbjct: 193 NQIAGGA 199
>Z22176-7|CAA80137.1| 910|Caenorhabditis elegans Hypothetical
protein ZK1098.8 protein.
Length = 910
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -1
Query: 752 PNIRYDF----SSCIKDLSNLIIQNK-VQIPFSKAGFFVFETEM*MRQHM 618
PN+ DF S +++ L+++ K +Q+P + FVFE E + HM
Sbjct: 357 PNVMRDFFRQPDSKLREAKELLVRRKTLQVPLNGEQLFVFENERRTQIHM 406
>AF078781-1|AAC26915.2| 258|Caenorhabditis elegans Hypothetical
protein B0545.3 protein.
Length = 258
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 208 YSLGLISSSCLDGFFSAATTGCCEA 134
YS+G ++S+C +G F +TG C A
Sbjct: 224 YSVGDVASACSEGTFGDPSTGLCVA 248
>AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily
assigned gene nameprotein 63 protein.
Length = 604
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 144 QPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHP 269
+P++++ + +E PN Y LR AV + K K D P
Sbjct: 363 KPLISSSLAEPENKENTKPNSPYSLRKRAVDSSKKPGKSDSP 404
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,159,976
Number of Sequences: 27780
Number of extensions: 335672
Number of successful extensions: 877
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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