Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_P18
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...   107   1e-24
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    29   0.75 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    28   1.3  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   2.3  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   2.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.0  
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    27   4.0  
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    27   4.0  

>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score =  107 bits (258), Expect = 1e-24
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 1/176 (0%)
 Frame = +2

Query: 143 FLGIPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAPPAAKRKKTXXXXXXXXX 322
           FL +  P  YVAG+GRGATGFTTRSD+GPA++   +        A +++K+         
Sbjct: 8   FLNMQPPPNYVAGLGRGATGFTTRSDLGPAQE---LPSQESIKAAIEQRKSEIEEEEDID 64

Query: 323 XXXXXXXFSGYSGSLFSKDPYDKDDAEADAIYESIDXXXXXXXXXXXXXXXXXXXXXXXQ 502
                        +LF+  PYD +D EAD IY+S++                       +
Sbjct: 65  PRYQDPD---NEVALFATAPYDHEDEEADKIYQSVEEHLSKRRKSQREKQEQLQKEKYEK 121

Query: 503 ERPKIQQQFSDLKRELKTVSEDEWAAIPEVGD-ARNRKQRNPRAEKFTPLPDSVLS 667
           E PK+  QF+DLKR L T+++++W  IPE GD  R ++ + PR E+F    D VL+
Sbjct: 122 ENPKVSSQFADLKRGLSTLTDEDWNNIPEPGDLTRKKRTKQPRRERFYATSDFVLA 177


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 405 QMQSMSPLTRGWMRRGRSIEKKDLKKTWKDIDRRGQKFNSNSL 533
           Q +S+S LT   M     I++  L K W D   RGQ+F  +S+
Sbjct: 382 QGRSLSMLTSSTMSVDPDIQESHLLKGWYDGQGRGQEFAKHSV 424


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 167  GYVAGVGRGATGFTTRSDIGPARDANDVSD 256
            G V G+G+G  GFTT+  +G    A+ +S+
Sbjct: 2891 GLVKGLGKGLVGFTTKPLVGLFDFASSISE 2920


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/58 (31%), Positives = 23/58 (39%)
 Frame = +2

Query: 590 VGDARNRKQRNPRAEKFTPLPDSVLSRNLGGESSSSIDPGSGLXSMMPGVVTPGMLTP 763
           V D R+  +RN +   F     S+ S   GG SS +   GSG  S     V      P
Sbjct: 96  VSDVRSYDERNQKKSAFENFVSSMSSFLTGGGSSPTSSYGSGSASPRKSTVISSPFDP 153


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 155 PAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAP 271
           PAP  Y   +   AT F   S   P+ D N V   +H P
Sbjct: 364 PAPYVYRNNLPPSATSFQPSSSRSPSVDPNTVKSAQHIP 402


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -2

Query: 598 IAYFGDRRPFIFRNCF*FTFQVRELLLNFWPLLSISFQVFFKSFFSIL 455
           + YF   RP  F + F F  Q   L  ++ P+LS     ++KS + +L
Sbjct: 523 LTYFNMYRPLCFASIFPFIKQQFILFNDYSPMLSYEAIDYWKSLYILL 570


>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 124 KQKQKAFLRHSRTARLCRWCRKRSYWFHDS 213
           K  Q   +RH+++  +CR C KRS+    S
Sbjct: 3   KGTQSFGMRHNKSHTICRRCGKRSFHIQKS 32


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 124 KQKQKAFLRHSRTARLCRWCRKRSYWFHDS 213
           K  Q   +RH+++  +CR C KRS+    S
Sbjct: 3   KGTQSFGMRHNKSHTICRRCGKRSFHIQKS 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,192
Number of Sequences: 5004
Number of extensions: 50376
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)