Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_P18
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0520 - 18495118-18498237 122 2e-28
01_01_1127 + 8930593-8932681,8932812-8933401 110 1e-24
03_02_0539 - 9329572-9330729,9330988-9331041 30 1.8
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 28 7.3
01_06_1651 + 38909410-38909625,38909713-38910181,38910265-38910899 28 7.3
07_03_0944 + 22787933-22789906 28 9.6
07_01_0599 - 4457770-4458449,4458575-4458944 28 9.6
04_03_0954 - 21124183-21124507,21124645-21124682,21124781-21124948 28 9.6
04_03_0621 - 18102243-18104249 28 9.6
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 28 9.6
02_01_0278 - 1851338-1851412,1851579-1851819,1851946-1852047,185... 28 9.6
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 122 bits (295), Expect = 2e-28
Identities = 86/226 (38%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Frame = +2
Query: 143 FLGIPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAPPAAK-----RKKTXXXX 307
FL P YVAG+GRGATGFTTRSDIGPAR A D+ D A AA R K
Sbjct: 110 FLNSKPPPNYVAGLGRGATGFTTRSDIGPARAAPDLPDRSAAAAAAPAVGRGRGKPPGDD 169
Query: 308 XXXXXXXXXXXX---------FSGYSGSLFSKDPYDKDDAEADAIYESIDXXXXXXXXXX 460
F G LFS YD DD EADA++ESID
Sbjct: 170 DGDDDGGDEEKGYDENQKFDEFEGNDAGLFSNADYDDDDREADAVWESIDQRMDSRRKDR 229
Query: 461 XXXXXXXXXXXXXQERPKIQQQFSDLKRELKTVSEDEWAAIPEVGDARNRKQRNPRAEKF 640
PKI +QF+DLKR+L +S EW +IPE+GD R ++ R E F
Sbjct: 230 REARLKQEIEKYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYSLRNKKK-RFESF 288
Query: 641 TPLPDSVLSR-NLGGESSSSIDPGSGLXSMMPGVVTPGMLTPSGDL 775
P+PD++L + E +++DP S G TP TP DL
Sbjct: 289 VPVPDTLLEKARQEQEHVTALDPKSRAAG---GTETPWAQTPVTDL 331
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 110 bits (264), Expect = 1e-24
Identities = 77/228 (33%), Positives = 100/228 (43%), Gaps = 5/228 (2%)
Frame = +2
Query: 107 PPQAFVNKNKKHFLGIPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAPPA--A 280
PP + FL P YVA +GRGA GFTTRSDIGPA + R PP
Sbjct: 16 PPPPAACAARYDFLNSKPPPNYVARLGRGAAGFTTRSDIGPA-----MGRGRGKPPGDDG 70
Query: 281 KRKKTXXXXXXXXXXXXXXXXFSGYSGSLFSKDPYDKDD--AEADAIYESIDXXXXXXXX 454
F G LFS +D DD EADA++E ID
Sbjct: 71 DGDGGGDEEEKGYDENQKFDEFEGNDAGLFSNAGHDDDDDDREADAVWEGIDRRMDSRRK 130
Query: 455 XXXXXXXXXXXXXXXQERPKIQQQFSDLKRELKTVSEDEWAAIPEVGDARNRKQRNPRAE 634
PKI +QF+DLKR+L +S EW +IPE+GD R+ + R E
Sbjct: 131 DWREARLKQEIERYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYSLRRNKKRRFE 190
Query: 635 KFTPLPDSVLSRNLGGESS-SSIDPGSGLXSMMPGVVTPGMLTPSGDL 775
F P+PD++L + + +++DP S + G TP TP DL
Sbjct: 191 SFVPVPDTLLEKARQEQGHVTALDPKS--RAAAAGAETPWAQTPVTDL 236
>03_02_0539 - 9329572-9330729,9330988-9331041
Length = 403
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 641 TPLPDSVLSRNLGGESSSSIDPGSGLXSMMPGVVTPGMLTPSG 769
+P+P + S GG ++ +I P SGL SM + G + P G
Sbjct: 178 SPMPSAAASTQPGGAAAGAIIPPSGLSSMSHHLPFLGAMHPPG 220
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -1
Query: 149 LRNAFCFCLQMLVVVQTFLRKI*S*GFFRKHYFCKNSLXLNFTKSSS 9
L NA + +L V+TFL + S GFF++ N+ +N T ++S
Sbjct: 148 LGNAVAGSMYVLGAVETFLDAVPSAGFFKESVTVVNNTLVNGTATAS 194
>01_06_1651 + 38909410-38909625,38909713-38910181,38910265-38910899
Length = 439
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 674 LGGESSSSIDPGSGLXSMMPGVVTPGMLTPSGDLDL 781
LGG SS S PG G S+ G P +++ L L
Sbjct: 130 LGGTSSRSCPPGQGKLSLSTGAAAPTIVSQGSRLYL 165
>07_03_0944 + 22787933-22789906
Length = 657
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 569 EWAAIPEVGDARNRKQRNPRAEKFTPLPDSVLSRNLGGESSSSIDPGSGL 718
+W P V N ++R+PR +T +P R G S S + G+
Sbjct: 252 DWTECPFVHPGENARRRDPRKHPYTAVPCPNFRRPGGCPSGDSCEFSHGV 301
>07_01_0599 - 4457770-4458449,4458575-4458944
Length = 349
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 680 GESSSSIDPGSGLXSMMPGVVTPGML 757
G SSS PGSG + GV+ P ML
Sbjct: 42 GNKSSSAAPGSGYGGAVDGVLPPEML 67
>04_03_0954 - 21124183-21124507,21124645-21124682,21124781-21124948
Length = 176
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 459 IEKKDLKKTWKDIDR-RGQKFNSNSLT*NVN 548
I KKDL T KD+DR +G++ + T N+N
Sbjct: 44 ITKKDLVSTLKDLDRSKGKELGQTNHTQNMN 74
>04_03_0621 - 18102243-18104249
Length = 668
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 124 KQKQKAFLRHSRTARLCRWC 183
K + KAFL + RT R+C +C
Sbjct: 217 KSELKAFLHYERTPRICTFC 236
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 592 YFGDRRPFIFRNCF*FTFQVRELLLNFWPLLSISFQVFFKSFFSILLPLLIHPLVN 425
YF P I RNC VR+ L + L S F+++ I+LP ++ L +
Sbjct: 1653 YFDQILPDIIRNCSHQKASVRDGHLTLFRYLPRSLGGVFQNYLQIVLPAILDGLAD 1708
>02_01_0278 -
1851338-1851412,1851579-1851819,1851946-1852047,
1852291-1852364,1852455-1852592,1852848-1853003,
1853364-1853513,1853808-1853867,1853946-1854073,
1854209-1854617,1855571-1855628,1856435-1856493,
1857478-1857606,1857765-1857774,1858134-1858183,
1858633-1858854
Length = 686
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 608 RKQRNPRAEKFTPLPDSVLSRNLGGESSSSIDPG 709
R++R A + PL S L+R+ GG+ + PG
Sbjct: 15 RRRRGRTASAYQPLRSSSLARHPGGDGGLEVVPG 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,464,359
Number of Sequences: 37544
Number of extensions: 366449
Number of successful extensions: 1115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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